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Explore HG002 comparison results

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Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1385 1386 1387 1388 1389 1390 1391 1392 1393 ... 1720 1721 » 69401-69450 / 86044 show all
hfeng-pmm3	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*	98.3756	97.0003	99.7905	79.9603	10477	324	10478	22	4	18.1818
ltrigg-rtg1	SNP	*	map_l150_m1_e0	*	98.9007	98.0267	99.7905	66.4727	30005	604	30007	63	22	34.9206
ltrigg-rtg2	INDEL	*	lowcmp_SimpleRepeat_triTR_11to50	*	99.5382	99.2871	99.7905	44.9407	6685	48	6668	14	4	28.5714
bgallagher-sentieon	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.7906	99.7906	99.7906	80.2523	953	2	953	2	1	50.0000
astatham-gatk	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.7906	99.7906	99.7906	80.3781	953	2	953	2	1	50.0000
dgrover-gatk	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.7906	99.7906	99.7906	80.5736	953	2	953	2	1	50.0000
jlack-gatk	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.7906	99.7906	99.7906	80.4703	953	2	953	2	1	50.0000
rpoplin-dv42	SNP	*	map_l100_m2_e1	homalt	99.6343	99.4783	99.7907	63.6404	27651	145	27652	58	54	93.1034
ckim-dragen	SNP	ti	map_l150_m2_e1	homalt	99.4457	99.1031	99.7907	67.9320	7624	69	7629	16	15	93.7500
astatham-gatk	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.5825	99.3750	99.7908	68.8193	1431	9	1431	3	0	0.0000
ltrigg-rtg1	INDEL	D6_15	lowcmp_SimpleRepeat_diTR_11to50	homalt	99.0970	98.4127	99.7908	31.1983	1922	31	1908	4	3	75.0000
jmaeng-gatk	INDEL	*	lowcmp_SimpleRepeat_triTR_11to50	*	99.5459	99.3019	99.7911	49.8616	6686	47	6688	14	9	64.2857
astatham-gatk	SNP	ti	map_l100_m2_e1	het	87.0268	77.1576	99.7911	74.6941	23888	7072	23881	50	23	46.0000
jli-custom	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.8955	100.0000	99.7912	75.1685	478	0	478	1	1	100.0000
hfeng-pmm2	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.8955	100.0000	99.7912	74.9083	478	0	478	1	1	100.0000
hfeng-pmm3	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.8955	100.0000	99.7912	74.6829	478	0	478	1	1	100.0000
egarrison-hhga	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	99.5833	99.3763	99.7912	54.8113	478	3	478	1	0	0.0000
gduggal-bwavard	SNP	ti	map_l125_m0_e0	homalt	98.3384	96.9272	99.7913	70.3716	4353	138	4304	9	7	77.7778
ltrigg-rtg2	SNP	*	map_l100_m2_e1	*	99.2263	98.6673	99.7916	56.2116	73741	996	73738	154	24	15.5844
ltrigg-rtg2	SNP	ti	HG002compoundhet	*	99.3879	98.9873	99.7918	33.3089	17301	177	17255	36	13	36.1111
jmaeng-gatk	SNP	tv	HG002compoundhet	homalt	99.4223	99.0555	99.7918	42.9493	3356	32	3355	7	6	85.7143
ndellapenna-hhga	SNP	tv	map_siren	het	99.3169	98.8465	99.7918	55.1017	28279	330	28279	59	19	32.2034
rpoplin-dv42	SNP	*	map_l100_m1_e0	homalt	99.6291	99.4667	99.7919	61.1512	26859	144	26860	56	52	92.8571
rpoplin-dv42	SNP	ti	map_l100_m2_e0	homalt	99.6664	99.5412	99.7919	62.9736	18225	84	18226	38	36	94.7368
jpowers-varprowl	SNP	tv	HG002complexvar	het	99.3313	98.8748	99.7919	23.6187	149035	1696	149155	311	60	19.2926
ckim-isaac	SNP	ti	map_l100_m2_e1	het	83.1462	71.2597	99.7920	67.1300	22062	8898	22066	46	4	8.6957
astatham-gatk	SNP	ti	map_l125_m2_e0	*	91.2512	84.0571	99.7920	76.0047	25434	4824	25430	53	29	54.7170
hfeng-pmm2	SNP	ti	map_l150_m2_e1	homalt	99.8050	99.8180	99.7921	73.2339	7679	14	7679	16	7	43.7500
gduggal-bwavard	INDEL	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	85.7527	75.1764	99.7922	61.3457	23125	7636	23046	48	38	79.1667
bgallagher-sentieon	INDEL	*	HG002complexvar	het	99.6698	99.5477	99.7922	57.6447	46003	209	45633	95	61	64.2105
ndellapenna-hhga	SNP	*	map_l125_m1_e0	*	99.1686	98.5527	99.7922	67.5463	44671	656	44671	93	49	52.6882
ndellapenna-hhga	SNP	ti	map_l150_m2_e0	*	99.0695	98.3571	99.7923	74.0705	20175	337	20175	42	23	54.7619
ltrigg-rtg1	SNP	tv	lowcmp_SimpleRepeat_diTR_11to50	*	99.4211	99.0527	99.7923	61.9326	4810	46	4804	10	2	20.0000
ltrigg-rtg2	SNP	ti	map_siren	*	99.4787	99.1669	99.7924	46.9044	99518	836	99513	207	30	14.4928
qzeng-custom	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	hetalt	86.5391	76.3934	99.7924	26.7984	3550	1097	1442	3	3	100.0000
gduggal-snapfb	SNP	ti	map_l100_m2_e0	homalt	98.4558	97.1544	99.7924	69.0150	17788	521	17789	37	21	56.7568
ckim-isaac	SNP	ti	map_l125_m2_e0	*	75.2532	60.4006	99.7925	72.3144	18276	11982	18276	38	7	18.4211
jlack-gatk	INDEL	D1_5	HG002complexvar	homalt	99.8161	99.8396	99.7926	59.1577	10581	17	10588	22	21	95.4545
qzeng-custom	SNP	tv	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.7805	99.7685	99.7926	58.3234	3878	9	3850	8	7	87.5000
gduggal-bwavard	SNP	tv	map_l150_m1_e0	homalt	98.7838	97.7952	99.7926	71.2507	3859	87	3849	8	6	75.0000
ckim-dragen	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.8269	99.8611	99.7927	69.0150	1438	2	1444	3	2	66.6667
gduggal-snapvard	SNP	tv	map_l125_m2_e0	homalt	98.0723	96.4102	99.7927	68.8173	5801	216	5778	12	9	75.0000
mlin-fermikit	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331	hetalt	79.5102	66.0798	99.7928	43.7451	1276	655	1445	3	2	66.6667
mlin-fermikit	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	hetalt	79.5102	66.0798	99.7928	43.7451	1276	655	1445	3	2	66.6667
astatham-gatk	SNP	ti	map_l100_m2_e0	het	86.9897	77.0982	99.7928	74.7072	23609	7013	23602	49	23	46.9388
ckim-dragen	SNP	ti	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.8565	99.9202	99.7929	46.2638	6263	5	6265	13	5	38.4615
egarrison-hhga	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.6125	99.4327	99.7930	57.8718	3856	22	3856	8	3	37.5000
raldana-dualsentieon	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.6255	99.4585	99.7930	57.9022	3857	21	3857	8	0	0.0000
hfeng-pmm2	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	99.3814	98.9733	99.7930	65.0253	482	5	482	1	1	100.0000
jmaeng-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_11to50	hetalt	98.2315	96.7180	99.7931	31.3447	1444	49	1447	3	3	100.0000

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