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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1384 1385 1386 1387 1388 1389 1390 1391 1392 ... 1720 1721 » 69351-69400 / 86044 show all
cchapple-custom	SNP	ti	*	het	99.8339	99.8795	99.7883	21.7295	1280346	1545	1280384	2716	443	16.3108
gduggal-snapvard	SNP	tv	map_l150_m1_e0	homalt	97.7764	95.8439	99.7884	71.1912	3782	164	3772	8	6	75.0000
ckim-dragen	SNP	ti	map_l150_m2_e0	homalt	99.4533	99.1203	99.7886	67.8815	7549	67	7554	16	15	93.7500
ckim-isaac	SNP	*	map_l100_m0_e0	*	74.0949	58.9233	99.7886	67.9602	19351	13490	19354	41	9	21.9512
rpoplin-dv42	SNP	*	map_l100_m2_e0	homalt	99.6325	99.4768	99.7886	63.6376	27379	144	27380	58	54	93.1034
astatham-gatk	INDEL	D16_PLUS	lowcmp_SimpleRepeat_diTR_51to200	hetalt	93.3542	87.6993	99.7886	34.9381	385	54	472	1	1	100.0000
ltrigg-rtg1	SNP	tv	HG002compoundhet	homalt	99.0027	98.2290	99.7886	40.4282	3328	60	3304	7	1	14.2857
gduggal-snapplat	SNP	ti	map_l250_m2_e1	homalt	88.8192	80.0226	99.7887	88.9408	1418	354	1417	3	3	100.0000
hfeng-pmm2	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	*	99.3687	98.9523	99.7887	50.3034	4250	45	4250	9	0	0.0000
hfeng-pmm1	SNP	ti	map_l100_m2_e0	*	99.5722	99.3566	99.7887	64.0145	48646	315	48639	103	32	31.0680
qzeng-custom	SNP	ti	*	*	99.5194	99.2515	99.7887	20.8361	2069907	15611	2063126	4368	997	22.8251
ndellapenna-hhga	SNP	ti	map_l150_m1_e0	*	99.0365	98.2955	99.7888	72.3511	19376	336	19376	41	23	56.0976
cchapple-custom	INDEL	I1_5	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.2719	98.7603	99.7888	58.8261	956	12	945	2	2	100.0000
hfeng-pmm3	SNP	tv	lowcmp_AllRepeats_51to200bp_gt95identity_merged	het	97.4729	95.2621	99.7888	69.4023	945	47	945	2	0	0.0000
hfeng-pmm1	SNP	ti	map_l100_m2_e1	*	99.5757	99.3634	99.7889	64.0077	49170	315	49163	104	32	30.7692
jlack-gatk	SNP	tv	map_l100_m0_e0	homalt	99.0571	98.3359	99.7889	62.7592	3782	64	3782	8	5	62.5000
gduggal-snapvard	SNP	tv	HG002complexvar	homalt	98.0989	96.4652	99.7889	20.7946	91749	3362	89348	189	93	49.2063
dgrover-gatk	INDEL	D16_PLUS	lowcmp_SimpleRepeat_diTR_51to200	hetalt	93.6119	88.1549	99.7890	35.1573	387	52	473	1	1	100.0000
cchapple-custom	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.7899	99.7908	99.7890	71.4801	477	1	473	1	1	100.0000
ckim-dragen	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_11to50	*	99.6797	99.5705	99.7890	51.2505	11824	51	11826	25	20	80.0000
asubramanian-gatk	SNP	ti	func_cds	*	99.6805	99.5721	99.7892	27.6472	13728	59	13726	29	1	3.4483
gduggal-bwafb	SNP	ti	lowcmp_SimpleRepeat_triTR_11to50	homalt	99.6843	99.5795	99.7893	29.7830	1421	6	1421	3	1	33.3333
raldana-dualsentieon	SNP	tv	lowcmp_SimpleRepeat_diTR_11to50	*	98.6778	97.5906	99.7894	64.3361	4739	117	4739	10	8	80.0000
ltrigg-rtg1	SNP	*	map_l100_m1_e0	*	99.3061	98.8274	99.7894	56.8168	71554	849	71550	151	36	23.8411
ckim-isaac	SNP	ti	map_l100_m2_e0	het	83.0715	71.1515	99.7894	67.1619	21788	8834	21792	46	4	8.6957
ckim-isaac	SNP	ti	map_l125_m2_e1	*	75.3035	60.4665	99.7895	72.3331	18484	12085	18484	39	8	20.5128
dgrover-gatk	SNP	ti	HG002compoundhet	het	99.7790	99.7685	99.7895	39.8442	9483	22	9481	20	14	70.0000
ndellapenna-hhga	SNP	ti	map_l150_m2_e1	*	99.0741	98.3690	99.7895	74.1500	20385	338	20385	43	23	53.4884
asubramanian-gatk	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.3694	98.9529	99.7895	80.5964	945	10	948	2	1	50.0000
gduggal-snapvard	SNP	*	map_l100_m1_e0	homalt	98.0408	96.3523	99.7895	60.4906	26018	985	25605	54	41	75.9259
rpoplin-dv42	INDEL	*	*	homalt	99.5190	99.2498	99.7896	55.3247	124233	939	124240	262	239	91.2214
ckim-isaac	SNP	ti	map_l125_m1_e0	*	74.8103	59.8330	99.7896	70.2803	17552	11783	17552	37	7	18.9189
ltrigg-rtg1	SNP	ti	map_l100_m0_e0	*	98.9181	98.0616	99.7897	58.0234	21349	422	21353	45	17	37.7778
hfeng-pmm2	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	*	97.8606	96.0047	99.7897	49.8726	5695	237	5695	12	11	91.6667
hfeng-pmm3	INDEL	I1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	98.6199	97.4770	99.7898	71.4168	15184	393	15192	32	22	68.7500
asubramanian-gatk	SNP	*	map_l100_m1_e0	het	63.0315	46.0636	99.7898	86.5707	20894	24465	20888	44	12	27.2727
jli-custom	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.6329	99.4764	99.7899	79.2908	950	5	950	2	1	50.0000
ltrigg-rtg1	SNP	ti	map_l100_m2_e1	*	99.3168	98.8481	99.7899	59.0336	48915	570	48917	103	29	28.1553
hfeng-pmm2	SNP	ti	map_l150_m2_e0	homalt	99.8031	99.8162	99.7900	73.1902	7602	14	7602	16	7	43.7500
ckim-dragen	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.7904	99.7906	99.7901	80.0042	953	2	951	2	1	50.0000
ckim-gatk	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.6855	99.5812	99.7901	80.3667	951	4	951	2	1	50.0000
ckim-vqsr	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.6855	99.5812	99.7901	80.3667	951	4	951	2	1	50.0000
egarrison-hhga	SNP	ti	map_l150_m1_e0	*	99.3657	98.9448	99.7902	73.6441	19504	208	19504	41	20	48.7805
qzeng-custom	INDEL	I1_5	HG002compoundhet	hetalt	84.6325	73.4723	99.7902	54.7416	8212	2965	3329	7	5	71.4286
rpoplin-dv42	SNP	ti	map_siren	*	99.6562	99.5227	99.7902	53.3616	99876	479	99868	210	138	65.7143
qzeng-custom	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	99.6872	99.5842	99.7904	53.5992	479	2	476	1	1	100.0000
bgallagher-sentieon	INDEL	I6_15	lowcmp_AllRepeats_51to200bp_gt95identity_merged	hetalt	92.6223	86.4151	99.7904	48.0392	458	72	476	1	1	100.0000
bgallagher-sentieon	SNP	*	map_l125_m0_e0	homalt	99.5370	99.2849	99.7904	67.2503	6664	48	6664	14	10	71.4286
gduggal-snapplat	SNP	ti	map_l125_m0_e0	homalt	91.7078	84.8363	99.7904	71.0087	3810	681	3809	8	8	100.0000
jli-custom	INDEL	D16_PLUS	lowcmp_SimpleRepeat_diTR_51to200	hetalt	94.5039	89.7494	99.7904	31.1688	394	45	476	1	1	100.0000

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