PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1383 1384 1385 1386 1387 1388 1389 1390 1391 ... 1720 1721 » 69301-69350 / 86044 show all
jli-custom	INDEL	I1_5	lowcmp_SimpleRepeat_triTR_11to50	het	99.3590	98.9362	99.7854	67.0205	465	5	465	1	1	100.0000
bgallagher-sentieon	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	99.4652	99.1471	99.7854	85.5145	465	4	465	1	1	100.0000
asubramanian-gatk	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	99.0342	98.2942	99.7854	85.3275	461	8	465	1	1	100.0000
ckim-gatk	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	99.4652	99.1471	99.7854	85.4602	465	4	465	1	1	100.0000
ckim-vqsr	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	99.4652	99.1471	99.7854	85.4602	465	4	465	1	1	100.0000
raldana-dualsentieon	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	99.4652	99.1471	99.7854	85.1071	465	4	465	1	1	100.0000
rpoplin-dv42	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.2269	98.6744	99.7855	71.4089	1861	25	1861	4	2	50.0000
ndellapenna-hhga	INDEL	*	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.4473	99.1113	99.7856	56.2027	16283	146	16290	35	23	65.7143
gduggal-snapplat	SNP	ti	map_l250_m2_e0	homalt	88.7618	79.9314	99.7857	88.9135	1398	351	1397	3	3	100.0000
hfeng-pmm3	SNP	tv	map_l125_m2_e1	homalt	99.7612	99.7366	99.7859	69.7479	6058	16	6058	13	5	38.4615
jmaeng-gatk	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	99.5726	99.3603	99.7859	85.7055	466	3	466	1	1	100.0000
ckim-vqsr	INDEL	I1_5	lowcmp_SimpleRepeat_triTR_11to50	het	99.3592	98.9362	99.7859	69.6359	465	5	466	1	1	100.0000
egarrison-hhga	INDEL	*	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.5363	99.2878	99.7860	56.6980	16312	117	16318	35	21	60.0000
hfeng-pmm1	SNP	tv	map_l125_m2_e1	homalt	99.7942	99.8024	99.7860	69.8227	6062	12	6062	13	5	38.4615
gduggal-snapvard	SNP	*	map_l100_m2_e0	homalt	98.0484	96.3703	99.7860	62.8472	26524	999	26107	56	43	76.7857
ltrigg-rtg1	SNP	*	map_l150_m2_e0	*	98.9313	98.0912	99.7860	68.8564	31244	608	31247	67	22	32.8358
egarrison-hhga	SNP	tv	map_l125_m1_e0	*	99.3983	99.0135	99.7861	68.1855	15858	158	15858	34	17	50.0000
eyeh-varpipe	SNP	tv	map_l250_m2_e1	homalt	99.6815	99.5772	99.7861	89.7714	942	4	933	2	2	100.0000
hfeng-pmm1	SNP	ti	map_l100_m1_e0	*	99.5693	99.3532	99.7862	62.2569	47621	310	47614	102	32	31.3725
hfeng-pmm2	SNP	tv	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	99.0538	98.3322	99.7862	63.3791	17275	293	17266	37	4	10.8108
jmaeng-gatk	INDEL	I1_5	lowcmp_SimpleRepeat_triTR_11to50	het	99.4666	99.1489	99.7863	69.8065	466	4	467	1	1	100.0000
ndellapenna-hhga	SNP	tv	map_l250_m2_e1	homalt	99.3631	98.9429	99.7868	87.0245	936	10	936	2	2	100.0000
astatham-gatk	INDEL	I1_5	lowcmp_SimpleRepeat_triTR_11to50	het	99.5738	99.3617	99.7868	68.6707	467	3	468	1	1	100.0000
bgallagher-sentieon	INDEL	I1_5	lowcmp_SimpleRepeat_triTR_11to50	het	99.5738	99.3617	99.7868	68.2894	467	3	468	1	1	100.0000
astatham-gatk	SNP	tv	segdup	het	98.6416	97.5222	99.7869	92.4167	5156	131	5152	11	0	0.0000
cchapple-custom	INDEL	*	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.6346	99.4826	99.7870	59.5165	16344	85	17330	37	22	59.4595
egarrison-hhga	SNP	*	map_l100_m2_e0	het	99.3648	98.9461	99.7870	65.4283	45910	489	45911	98	31	31.6327
egarrison-hhga	SNP	*	map_l100_m2_e1	het	99.3694	98.9552	99.7871	65.4429	46408	490	46409	99	31	31.3131
ckim-isaac	SNP	tv	HG002complexvar	*	95.4727	91.5159	99.7871	19.3101	225271	20884	225437	481	401	83.3680
rpoplin-dv42	SNP	ti	segdup	homalt	99.8469	99.9067	99.7871	88.5156	7498	7	7498	16	16	100.0000
ltrigg-rtg2	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	98.9813	98.1884	99.7871	45.7254	6558	121	6563	14	11	78.5714
egarrison-hhga	SNP	tv	map_l250_m2_e1	homalt	99.4698	99.1543	99.7872	87.6462	938	8	938	2	2	100.0000
dgrover-gatk	INDEL	I1_5	lowcmp_SimpleRepeat_triTR_11to50	het	99.6807	99.5745	99.7872	69.0789	468	2	469	1	1	100.0000
ckim-gatk	INDEL	I1_5	lowcmp_SimpleRepeat_triTR_11to50	het	99.6807	99.5745	99.7872	69.5003	468	2	469	1	1	100.0000
asubramanian-gatk	SNP	ti	map_l100_m2_e1	het	65.2727	48.4981	99.7873	85.9875	15015	15945	15011	32	12	37.5000
astatham-gatk	SNP	ti	map_l100_m1_e0	het	86.8541	76.8887	99.7875	73.5726	23022	6920	23015	49	23	46.9388
ltrigg-rtg2	INDEL	*	lowcmp_SimpleRepeat_triTR_11to50	hetalt	99.2954	98.8082	99.7875	49.1626	912	11	939	2	2	100.0000
ckim-dragen	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	99.8217	99.8558	99.7875	65.2986	1385	2	1409	3	2	66.6667
bgallagher-sentieon	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	homalt	99.3133	98.8433	99.7877	85.5411	940	11	940	2	2	100.0000
raldana-dualsentieon	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	homalt	99.3133	98.8433	99.7877	85.1420	940	11	940	2	2	100.0000
ndellapenna-hhga	SNP	*	map_l125_m2_e0	*	99.1850	98.5896	99.7877	69.4898	46064	659	46064	98	49	50.0000
ndellapenna-hhga	SNP	*	map_l125_m2_e1	*	99.1837	98.5869	99.7877	69.5422	46535	667	46535	99	49	49.4949
hfeng-pmm1	SNP	tv	lowcmp_AllRepeats_51to200bp_gt95identity_merged	het	97.2610	94.8589	99.7879	66.5958	941	51	941	2	0	0.0000
hfeng-pmm3	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.8145	99.8409	99.7880	71.0316	1883	3	1883	4	2	50.0000
gduggal-snapvard	SNP	*	map_l100_m2_e1	homalt	98.0418	96.3556	99.7880	62.8493	26783	1013	26357	56	43	76.7857
ckim-gatk	INDEL	D16_PLUS	lowcmp_SimpleRepeat_diTR_51to200	hetalt	93.3540	87.6993	99.7881	34.6260	385	54	471	1	1	100.0000
ckim-gatk	SNP	ti	HG002compoundhet	het	99.4351	99.0847	99.7881	40.5181	9418	87	9418	20	15	75.0000
ltrigg-rtg1	INDEL	I1_5	lowcmp_SimpleRepeat_diTR_11to50	hetalt	98.1325	96.5309	99.7881	46.4918	3673	132	3767	8	8	100.0000
ckim-vqsr	INDEL	D16_PLUS	lowcmp_SimpleRepeat_diTR_51to200	hetalt	93.3540	87.6993	99.7881	34.6260	385	54	471	1	1	100.0000
astatham-gatk	SNP	*	map_l125_m0_e0	homalt	99.0469	98.3164	99.7883	67.5212	6599	113	6599	14	11	78.5714

PrecisionFDA Truth Challenge

PrecisionFDA
Truth Challenge