PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1382 1383 1384 1385 1386 1387 1388 1389 1390 ... 1720 1721 » 69251-69300 / 86044 show all
gduggal-bwaplat	INDEL	D1_5	lowcmp_SimpleRepeat_homopolymer_6to10	het	93.0896	87.2376	99.7831	59.6058	12885	1885	12884	28	19	67.8571
ckim-dragen	INDEL	D1_5	lowcmp_SimpleRepeat_triTR_11to50	hetalt	99.5664	99.3506	99.7831	28.4161	459	3	460	1	1	100.0000
astatham-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_triTR_11to50	hetalt	99.6750	99.5671	99.7831	29.4028	460	2	460	1	1	100.0000
bgallagher-sentieon	INDEL	D16_PLUS	lowcmp_SimpleRepeat_diTR_51to200	hetalt	92.1775	85.6492	99.7831	34.9788	376	63	460	1	1	100.0000
bgallagher-sentieon	INDEL	D1_5	lowcmp_SimpleRepeat_triTR_11to50	hetalt	99.6750	99.5671	99.7831	28.3048	460	2	460	1	1	100.0000
asubramanian-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_triTR_11to50	hetalt	99.6750	99.5671	99.7831	30.2572	460	2	460	1	1	100.0000
hfeng-pmm2	INDEL	D1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	99.1803	98.5845	99.7833	71.8915	63519	912	63530	138	117	84.7826
raldana-dualsentieon	INDEL	D1_5	HG002complexvar	homalt	99.8492	99.9151	99.7834	59.8813	10589	9	10594	23	21	91.3043
gduggal-snapvard	SNP	*	map_l125_m2_e1	homalt	97.9034	96.0929	99.7834	68.5949	16847	685	16588	36	28	77.7778
hfeng-pmm2	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	99.7835	99.7835	99.7835	59.1512	461	1	461	1	1	100.0000
jli-custom	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	99.7835	99.7835	99.7835	58.0762	461	1	461	1	1	100.0000
ckim-isaac	SNP	ti	map_l100_m1_e0	het	82.8228	70.7902	99.7835	65.4154	21196	8746	21200	46	4	8.6957
raldana-dualsentieon	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	99.7835	99.7835	99.7835	62.5000	461	1	461	1	1	100.0000
hfeng-pmm3	INDEL	I1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	99.2415	98.7053	99.7836	77.2969	6023	79	5994	13	3	23.0769
hfeng-pmm1	INDEL	D1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	99.1552	98.5347	99.7836	72.0617	32749	487	32742	71	45	63.3803
gduggal-snapvard	SNP	tv	map_l100_m0_e0	homalt	97.9071	96.0998	99.7837	64.7675	3696	150	3690	8	5	62.5000
hfeng-pmm3	SNP	tv	map_l125_m2_e0	homalt	99.7590	99.7341	99.7838	69.7058	6001	16	6001	13	5	38.4615
asubramanian-gatk	SNP	ti	map_l100_m2_e0	het	65.0317	48.2333	99.7838	86.0511	14770	15852	14766	32	12	37.5000
asubramanian-gatk	SNP	ti	map_l100_m0_e0	het	49.6427	33.0401	99.7840	91.6649	4620	9363	4620	10	5	50.0000
hfeng-pmm2	INDEL	I1_5	lowcmp_SimpleRepeat_triTR_11to50	het	98.9273	98.0851	99.7840	68.0469	461	9	462	1	1	100.0000
hfeng-pmm1	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331	*	99.0389	98.3049	99.7840	74.1160	14324	247	14324	31	7	22.5806
hfeng-pmm1	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	*	99.0389	98.3049	99.7840	74.1160	14324	247	14324	31	7	22.5806
hfeng-pmm1	SNP	tv	map_l125_m2_e0	homalt	99.7923	99.8006	99.7840	69.7785	6005	12	6005	13	5	38.4615
raldana-dualsentieon	INDEL	I1_5	lowcmp_SimpleRepeat_triTR_11to50	het	99.0354	98.2979	99.7840	66.4006	462	8	462	1	1	100.0000
ltrigg-rtg1	INDEL	D1_5	lowcmp_SimpleRepeat_triTR_11to50	hetalt	99.1302	98.4848	99.7840	42.2693	455	7	462	1	1	100.0000
egarrison-hhga	SNP	*	map_l150_m2_e1	*	99.3609	98.9413	99.7840	74.9205	31869	341	31869	69	32	46.3768
eyeh-varpipe	SNP	tv	map_l250_m2_e0	homalt	99.6784	99.5731	99.7840	89.6709	933	4	924	2	2	100.0000
gduggal-bwaplat	INDEL	*	lowcmp_SimpleRepeat_homopolymer_6to10	*	92.7883	86.7091	99.7841	61.8573	24504	3756	24493	53	43	81.1321
rpoplin-dv42	SNP	tv	map_l100_m2_e1	homalt	99.5691	99.3550	99.7841	64.9074	9242	60	9242	20	18	90.0000
ltrigg-rtg1	SNP	ti	map_l150_m1_e0	het	98.4476	97.1463	99.7841	64.1912	12017	353	12019	26	5	19.2308
ltrigg-rtg2	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	hetalt	98.7188	97.6759	99.7842	42.6822	4539	108	4623	10	10	100.0000
gduggal-bwavard	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	96.9782	94.3258	99.7842	76.6072	1413	85	1387	3	2	66.6667
egarrison-hhga	SNP	tv	lowcmp_SimpleRepeat_quadTR_11to50	*	99.4954	99.2083	99.7842	37.6168	7393	59	7397	16	10	62.5000
jli-custom	INDEL	I1_5	*	*	99.4941	99.2055	99.7844	57.0293	149467	1197	149502	323	257	79.5666
hfeng-pmm3	INDEL	I1_5	lowcmp_SimpleRepeat_triTR_11to50	het	99.0356	98.2979	99.7845	67.5978	462	8	463	1	1	100.0000
ckim-dragen	INDEL	D16_PLUS	lowcmp_SimpleRepeat_diTR_51to200	hetalt	92.1781	85.6492	99.7845	35.1049	376	63	463	1	1	100.0000
egarrison-hhga	SNP	*	map_l150_m2_e0	*	99.3568	98.9326	99.7847	74.8691	31512	340	31512	68	32	47.0588
asubramanian-gatk	SNP	tv	map_l125_m1_e0	het	48.5238	32.0561	99.7847	92.9805	3246	6880	3245	7	1	14.2857
ltrigg-rtg1	INDEL	*	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.5211	99.2589	99.7847	51.9691	6027	45	6024	13	8	61.5385
ndellapenna-hhga	SNP	tv	map_l250_m2_e0	homalt	99.3569	98.9328	99.7847	86.9321	927	10	927	2	2	100.0000
jlack-gatk	SNP	*	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.8341	99.8836	99.7848	57.0872	17157	20	17153	37	8	21.6216
ltrigg-rtg2	INDEL	D1_5	lowcmp_SimpleRepeat_triTR_11to50	hetalt	99.3495	98.9177	99.7849	42.8747	457	5	464	1	1	100.0000
hfeng-pmm1	INDEL	*	HG002complexvar	*	99.1357	98.4949	99.7850	57.1428	75780	1158	75642	163	121	74.2331
astatham-gatk	SNP	ti	map_l125_m1_e0	*	91.1797	83.9407	99.7852	74.5658	24624	4711	24620	53	29	54.7170
egarrison-hhga	SNP	tv	map_l250_m2_e0	homalt	99.4647	99.1462	99.7852	87.5551	929	8	929	2	2	100.0000
ckim-vqsr	INDEL	*	HG002complexvar	het	99.5556	99.3270	99.7852	57.9433	45901	311	45518	98	61	62.2449
hfeng-pmm3	SNP	*	map_siren	het	99.6837	99.5824	99.7852	54.5786	90611	380	90597	195	18	9.2308
hfeng-pmm3	SNP	tv	HG002compoundhet	het	94.3711	89.5142	99.7852	53.0848	4183	490	4181	9	2	22.2222
ltrigg-rtg1	SNP	*	map_l150_m2_e1	*	98.9386	98.1062	99.7853	68.9443	31600	610	31606	68	22	32.3529
jli-custom	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	99.4652	99.1471	99.7854	85.6439	465	4	465	1	0	0.0000

PrecisionFDA Truth Challenge

PrecisionFDA
Truth Challenge