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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecision Frac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
68701-68750 / 86044 show all
ltrigg-rtg2SNPtvmap_l150_m2_e1het
98.0696
96.4480
99.7466
60.6896
70872617085181
5.5556
ckim-isaacSNP*map_l125_m0_e0*
70.7547
54.8207
99.7466
75.5092
10627875810627275
18.5185
ckim-isaacSNPtimap_l150_m1_e0*
71.6515
55.9050
99.7466
75.8793
11020869211020285
17.8571
rpoplin-dv42SNP*segdup*
99.7488
99.7506
99.7470
89.9398
2799770279917131
43.6620
rpoplin-dv42INDELD16_PLUSlowcmp_SimpleRepeat_diTR_11to50homalt
99.3711
98.9975
99.7475
60.5184
395439511
100.0000
ckim-vqsrSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhet
99.8736
100.0000
99.7475
55.0256
15800158040
0.0000
dgrover-gatkINDELI16_PLUS*hetalt
96.2521
92.9933
99.7475
58.1926
1951147197555
100.0000
asubramanian-gatkSNP*lowcmp_SimpleRepeat_homopolymer_6to10*
99.2719
98.8007
99.7476
56.4979
1697120616992436
13.9535
mlin-fermikitINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
77.3563
63.1748
99.7477
25.6850
5114298151401313
100.0000
gduggal-snapfbINDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10het
99.3852
99.0251
99.7479
54.5094
14626144146413715
40.5405
ltrigg-rtg2INDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
98.6787
97.6320
99.7480
46.7338
465911347501212
100.0000
ndellapenna-hhgaSNP*map_l150_m2_e1*
99.0401
98.3421
99.7481
73.9108
31676534316768040
50.0000
ckim-isaacINDELD1_5map_l100_m1_e0homalt
80.0809
66.8919
99.7481
73.7260
39619639611
100.0000
ckim-isaacSNPtimap_l250_m2_e0homalt
62.2886
45.2830
99.7481
85.1339
79295779222
100.0000
cchapple-customINDELI1_5map_sirenhomalt
99.3361
98.9274
99.7481
76.2512
119913118832
66.6667
jmaeng-gatkINDEL*HG002complexvarhet
99.5676
99.3876
99.7482
58.0104
459292834556011573
63.4783
asubramanian-gatkSNPtvmap_l150_m2_e0*
39.2587
24.4386
99.7483
94.9137
27758580277471
14.2857
ndellapenna-hhgaSNP*map_l150_m2_e0*
99.0356
98.3329
99.7484
73.8523
31321531313217940
50.6329
raldana-dualsentieonINDELD16_PLUSlowcmp_SimpleRepeat_diTR_11to50homalt
99.6236
99.4987
99.7487
64.4007
397239710
0.0000
hfeng-pmm2INDELD16_PLUSlowcmp_SimpleRepeat_diTR_11to50homalt
99.6236
99.4987
99.7487
63.6197
397239711
100.0000
ltrigg-rtg1SNPtimap_l250_m1_e0het
96.5578
93.5647
99.7488
79.9395
2777191278072
28.5714
jli-customSNPtvfunc_cds*
99.8629
99.9771
99.7489
28.1332
437014370110
0.0000
bgallagher-sentieonSNPtimap_l250_m1_e0homalt
99.3125
98.8799
99.7489
85.0633
158918158943
75.0000
rpoplin-dv42INDELD1_5lowcmp_SimpleRepeat_diTR_11to50homalt
99.2372
98.7305
99.7490
37.0877
71559271541818
100.0000
ckim-isaacINDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
97.0619
94.5157
99.7491
65.9214
206981201206775234
65.3846
ckim-isaacSNP*map_l125_m1_e0*
73.2800
57.9125
99.7492
70.8000
2625019077262526616
24.2424
ndellapenna-hhgaSNP*map_l100_m2_e1het
99.0834
98.4264
99.7493
64.4229
461607384616211641
35.3448
mlin-fermikitSNPtilowcmp_SimpleRepeat_triTR_11to50het
97.9878
96.2873
99.7494
25.8824
238692238860
0.0000
gduggal-bwavardSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
93.0574
87.2068
99.7494
78.9889
4096039811
100.0000
egarrison-hhgaSNP*map_l125_m0_e0*
99.2012
98.6588
99.7496
73.5088
19125260191254823
47.9167
ltrigg-rtg2SNPtvmap_l150_m0_e0*
97.6140
95.5678
99.7497
64.5964
39891853986100
0.0000
ltrigg-rtg1SNPtimap_l250_m1_e0*
97.6589
95.6541
99.7497
82.8747
43801994383116
54.5455
ckim-dragenSNPtvmap_l125_m2_e0homalt
99.5838
99.4183
99.7499
65.0891
59823559821513
86.6667
raldana-dualsentieonSNPtilowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
99.0352
98.3306
99.7499
54.7881
1755329817552444
9.0909
asubramanian-gatkSNPtiHG002compoundhethet
98.1344
96.5702
99.7500
39.9164
917932691772314
60.8696
hfeng-pmm2SNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
97.9622
96.2373
99.7500
82.0192
39901563990103
30.0000
astatham-gatkSNPtilowcmp_AllRepeats_51to200bp_gt95identity_merged*
99.0231
98.3067
99.7501
65.5325
319355319386
75.0000
hfeng-pmm3SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331*
99.2432
98.7413
99.7502
68.4984
3075139230752778
10.3896
hfeng-pmm3SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
99.2432
98.7413
99.7502
68.4984
3075139230752778
10.3896
hfeng-pmm2INDELI1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
99.1836
98.6234
99.7502
77.6187
6018845989157
46.6667
mlin-fermikitINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
77.4004
63.2326
99.7503
28.0442
5168300551931313
100.0000
gduggal-bwavardSNPtiHG002compoundhethomalt
90.8566
83.4190
99.7503
32.3766
6168122651941312
92.3077
ckim-dragenSNPtilowcmp_AllRepeats_lt51bp_gt95identity_merged*
99.7964
99.8426
99.7503
54.7629
2791544279637023
32.8571
ckim-dragenSNP*map_l150_m1_e0homalt
99.4842
99.2194
99.7504
65.7675
1118588111902825
89.2857
hfeng-pmm3INDEL**het
99.4705
99.1923
99.7504
58.0356
1925651568192191481313
65.0728
hfeng-pmm1INDELI1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
99.2583
98.7709
99.7505
77.4015
6027755998155
33.3333
ltrigg-rtg1SNPtimap_l250_m1_e0homalt
99.6262
99.5022
99.7505
86.3540
15998159944
100.0000
jli-customINDELI1_5map_l100_m2_e1het
99.1307
98.5185
99.7506
83.4469
7981280020
0.0000
ckim-isaacSNPtimap_l150_m2_e0*
72.1859
56.5571
99.7506
77.5984
11601891111601295
17.2414
gduggal-bwafbSNPti**
99.8083
99.8659
99.7507
20.3177
2082722279620828585206495
9.5083