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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1356 1357 1358 1359 1360 1361 1362 1363 1364 ... 1720 1721 » 67951-68000 / 86044 show all
ckim-gatk	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331	hetalt	96.4002	93.3232	99.6870	67.8894	615	44	637	2	2	100.0000
ckim-gatk	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	hetalt	96.4002	93.3232	99.6870	67.8894	615	44	637	2	2	100.0000
hfeng-pmm1	SNP	*	map_l125_m2_e1	*	99.4713	99.2564	99.6872	70.6981	46851	351	46845	147	41	27.8912
hfeng-pmm3	SNP	tv	map_l100_m2_e1	*	99.6458	99.6045	99.6872	66.3290	25183	100	25179	79	10	12.6582
jli-custom	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331	hetalt	96.5621	93.6267	99.6875	66.3512	617	42	638	2	2	100.0000
jli-custom	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	hetalt	96.5621	93.6267	99.6875	66.3512	617	42	638	2	2	100.0000
raldana-dualsentieon	INDEL	I6_15	lowcmp_SimpleRepeat_quadTR_11to50	*	98.1161	96.5935	99.6875	59.6596	1276	45	1276	4	3	75.0000
ltrigg-rtg2	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	homalt	98.8350	97.9969	99.6875	54.5131	636	13	638	2	1	50.0000
ltrigg-rtg1	INDEL	D1_5	map_l125_m0_e0	het	95.7836	92.1739	99.6875	74.7036	318	27	319	1	0	0.0000
gduggal-bwaplat	SNP	tv	*	*	98.5599	97.4574	99.6876	31.4101	945035	24655	945254	2962	440	14.8548
hfeng-pmm3	SNP	tv	map_l100_m0_e0	homalt	99.6488	99.6100	99.6877	65.3002	3831	15	3831	12	4	33.3333
jlack-gatk	INDEL	I1_5	HG002complexvar	*	99.5214	99.3556	99.6877	57.0609	33148	215	33197	104	72	69.2308
cchapple-custom	INDEL	D1_5	*	*	99.4223	99.1584	99.6877	55.8052	145510	1235	145535	456	300	65.7895
qzeng-custom	INDEL	D1_5	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.4030	99.1198	99.6877	55.5385	14640	130	15005	47	23	48.9362
ckim-dragen	SNP	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	99.7746	99.8617	99.6878	62.5042	35370	49	35441	111	28	25.2252
cchapple-custom	SNP	*	*	het	99.7822	99.8765	99.6880	23.4490	1871274	2313	1871921	5859	675	11.5207
hfeng-pmm2	SNP	tv	map_l100_m0_e0	homalt	99.6880	99.6880	99.6880	65.5500	3834	12	3834	12	4	33.3333
hfeng-pmm1	SNP	tv	map_l100_m0_e0	homalt	99.6880	99.6880	99.6880	65.4385	3834	12	3834	12	4	33.3333
jli-custom	INDEL	I6_15	lowcmp_SimpleRepeat_quadTR_11to50	*	98.1944	96.7449	99.6880	59.3016	1278	43	1278	4	3	75.0000
hfeng-pmm3	SNP	ti	map_l125_m0_e0	homalt	99.6659	99.6437	99.6881	69.8765	4475	16	4475	14	5	35.7143
hfeng-pmm1	SNP	ti	map_l125_m0_e0	homalt	99.6547	99.6215	99.6881	70.0040	4474	17	4474	14	5	35.7143
hfeng-pmm1	SNP	ti	segdup	*	99.7442	99.8004	99.6881	88.7407	19498	39	19496	61	5	8.1967
hfeng-pmm3	SNP	tv	map_l100_m2_e0	*	99.6443	99.6005	99.6881	66.3015	24933	100	24929	78	10	12.8205
ckim-dragen	INDEL	D1_5	HG002complexvar	homalt	99.7544	99.8207	99.6881	60.4958	10579	19	10549	33	30	90.9091
ltrigg-rtg1	INDEL	I1_5	HG002complexvar	het	99.2372	98.7905	99.6881	51.9353	17969	220	17257	54	28	51.8519
ckim-vqsr	INDEL	I1_5	*	het	99.5998	99.5116	99.6881	61.9903	78655	386	78634	246	145	58.9431
jlack-gatk	INDEL	I1_5	HG002complexvar	homalt	99.7623	99.8364	99.6883	53.0964	13426	22	13432	42	40	95.2381
hfeng-pmm3	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	98.8615	98.0480	99.6885	70.4692	1306	26	1280	4	2	50.0000
gduggal-snapfb	SNP	*	map_l100_m1_e0	homalt	98.4097	97.1633	99.6885	68.9633	26237	766	26239	82	29	35.3659
ltrigg-rtg2	INDEL	I1_5	map_l125_m1_e0	homalt	99.3846	99.0826	99.6885	78.7135	324	3	320	1	0	0.0000
egarrison-hhga	SNP	*	map_l150_m0_e0	*	99.0549	98.4292	99.6886	78.8145	11843	189	11843	37	16	43.2432
ltrigg-rtg1	SNP	*	map_l100_m2_e1	het	99.0006	98.3219	99.6887	57.1362	46111	787	46109	144	12	8.3333
astatham-gatk	SNP	*	map_l150_m2_e0	*	91.4701	84.5033	99.6888	80.0769	26916	4936	26910	84	40	47.6190
hfeng-pmm2	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331	hetalt	96.8846	94.2337	99.6890	71.2433	621	38	641	2	2	100.0000
hfeng-pmm2	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	hetalt	96.8846	94.2337	99.6890	71.2433	621	38	641	2	2	100.0000
hfeng-pmm3	INDEL	D6_15	lowcmp_SimpleRepeat_quadTR_11to50	het	98.3153	96.9789	99.6891	57.4040	1605	50	1603	5	2	40.0000
rpoplin-dv42	INDEL	I1_5	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.5344	99.3802	99.6891	63.3219	962	6	962	3	3	100.0000
ltrigg-rtg2	SNP	tv	map_l125_m2_e1	het	98.4798	97.2993	99.6893	57.3735	10268	285	10267	32	2	6.2500
jmaeng-gatk	SNP	ti	*	het	99.6655	99.6418	99.6893	25.0371	1277299	4592	1277249	3981	127	3.1902
ckim-isaac	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	96.0776	92.7182	99.6894	66.0081	2241	176	2247	7	6	85.7143
ndellapenna-hhga	SNP	ti	map_l125_m0_e0	het	98.4376	97.2165	99.6897	74.3678	8033	230	8033	25	12	48.0000
ltrigg-rtg1	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	homalt	99.2265	98.7673	99.6899	57.2281	641	8	643	2	1	50.0000
bgallagher-sentieon	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	hetalt	96.8850	94.2337	99.6899	70.3721	621	38	643	2	2	100.0000
bgallagher-sentieon	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331	hetalt	96.8850	94.2337	99.6899	70.3721	621	38	643	2	2	100.0000
hfeng-pmm3	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331	hetalt	97.0452	94.5372	99.6899	70.9197	623	36	643	2	2	100.0000
hfeng-pmm3	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	hetalt	97.0452	94.5372	99.6899	70.9197	623	36	643	2	2	100.0000
astatham-gatk	SNP	tv	map_l125_m1_e0	*	91.3826	84.3531	99.6900	75.2873	13510	2506	13508	42	14	33.3333
astatham-gatk	SNP	tv	map_l100_m2_e1	het	86.7191	76.7348	99.6902	76.6919	12230	3708	12226	38	10	26.3158
jmaeng-gatk	SNP	tv	*	*	99.5370	99.3842	99.6902	27.5023	963719	5971	963632	2995	80	2.6711
hfeng-pmm1	INDEL	I6_15	lowcmp_SimpleRepeat_quadTR_11to50	*	98.5452	97.4262	99.6902	60.4957	1287	34	1287	4	2	50.0000

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