PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecision Frac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
67551-67600 / 86044 show all
hfeng-pmm2INDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
99.3610
99.0730
99.6508
61.9238
855885632
66.6667
ltrigg-rtg1SNPtvmap_l150_m2_e1het
98.3805
97.1421
99.6509
65.0308
71382107136254
16.0000
ltrigg-rtg1SNPtvmap_l100_m1_e0het
98.9516
98.2617
99.6512
54.6439
1514926815144535
9.4340
ndellapenna-hhgaSNP*map_l150_m1_e0het
98.6191
97.6082
99.6512
73.3059
18854462188546630
45.4545
ndellapenna-hhgaSNPtimap_l250_m2_e0*
98.3102
97.0048
99.6513
87.8762
48581504858179
52.9412
ckim-vqsrSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
99.7260
99.8005
99.6515
49.5605
400384003142
14.2857
astatham-gatkINDELI16_PLUSlowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
97.2837
95.0257
99.6516
66.3934
5542957222
100.0000
astatham-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
98.1132
96.6216
99.6516
87.6280
228880228888
100.0000
raldana-dualsentieonINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
99.4779
99.3048
99.6516
61.8182
857685832
66.6667
bgallagher-sentieonSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
99.7634
99.8753
99.6517
47.8261
400654006140
0.0000
rpoplin-dv42SNP*map_sirenhet
99.5263
99.4010
99.6518
54.9841
9044654590433316159
50.3165
rpoplin-dv42INDEL*lowcmp_SimpleRepeat_quadTR_11to50homalt
99.3392
99.0283
99.6520
55.6062
60135960132119
90.4762
jmaeng-gatkSNPtvlowcmp_SimpleRepeat_triTR_11to50*
99.6666
99.6812
99.6520
39.8884
3439113436122
16.6667
cchapple-customINDELD1_5map_l100_m1_e0homalt
98.6333
97.6351
99.6522
79.5374
5781457322
100.0000
dgrover-gatkINDELI16_PLUSlowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
97.3738
95.1973
99.6522
66.4723
5552857322
100.0000
rpoplin-dv42INDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
95.8100
92.2531
99.6523
26.1175
428736042991515
100.0000
ckim-vqsrINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
99.5944
99.5365
99.6524
64.2502
859486032
66.6667
ckim-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
99.5944
99.5365
99.6524
64.2502
859486032
66.6667
ltrigg-rtg2INDELI1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
98.9113
98.1812
99.6524
74.7228
583010860202121
100.0000
astatham-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
99.5944
99.5365
99.6524
63.5095
859486032
66.6667
jli-customINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
99.5944
99.5365
99.6524
61.5590
859486032
66.6667
ltrigg-rtg1SNPtvlowcmp_SimpleRepeat_triTR_11to50*
99.6813
99.7101
99.6525
34.1910
3440103441123
25.0000
hfeng-pmm1INDEL***
99.3397
99.0289
99.6526
57.3618
34119633463410571189887
74.6005
jmaeng-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
99.6528
99.6528
99.6528
69.7320
574257422
100.0000
mlin-fermikitSNP*HG002complexvarhetalt
95.9866
92.5806
99.6528
34.0961
2872328711
100.0000
mlin-fermikitSNPtvHG002complexvarhetalt
95.9866
92.5806
99.6528
34.0961
2872328711
100.0000
dgrover-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
99.6526
99.6524
99.6528
63.6057
860386132
66.6667
ghariani-varprowlSNP*map_l125_m1_e0homalt
99.0868
98.5271
99.6530
67.5166
16656249166565839
67.2414
ckim-dragenSNPtilowcmp_SimpleRepeat_diTR_11to50het
99.7312
99.8094
99.6531
71.4710
314263160118
72.7273
ckim-isaacSNP*lowcmp_SimpleRepeat_diTR_11to50homalt
95.1611
91.0564
99.6533
48.4903
31463093162115
45.4545
jmaeng-gatkSNP*lowcmp_SimpleRepeat_triTR_11to50het
99.6967
99.7400
99.6534
39.6128
4604124600162
12.5000
ckim-vqsrSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
99.5262
99.3991
99.6536
77.7226
6617406617239
39.1304
ckim-dragenSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhet
99.0631
98.4795
99.6536
52.7550
8421386331
33.3333
jmaeng-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
99.7920
99.9306
99.6537
69.7338
14391143950
0.0000
ltrigg-rtg2INDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
98.2763
96.9365
99.6537
46.3792
256381259098
88.8889
hfeng-pmm1SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
93.9208
88.8117
99.6537
86.9255
1151145115140
0.0000
gduggal-snapfbSNPtisegduphomalt
99.6936
99.7335
99.6538
89.7294
7485207484269
34.6154
cchapple-customSNP*func_cds*
99.7855
99.9174
99.6539
26.7611
181351518142631
1.5873
dgrover-gatkSNPtilowcmp_AllRepeats_lt51bp_gt95identity_merged*
99.7696
99.8855
99.6539
55.1919
279273227926978
8.2474
ckim-dragenSNPtilowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
99.7569
99.8600
99.6542
57.5039
1782625178656215
24.1935
ndellapenna-hhgaSNP*map_l150_m2_e1het
98.6659
97.6968
99.6544
74.7044
19894469198946930
43.4783
raldana-dualsentieonSNPtvlowcmp_AllRepeats_lt51bp_gt95identity_merged*
99.3348
99.0173
99.6544
63.3928
27406272273979513
13.6842
gduggal-bwavardSNPti**
99.3434
99.0343
99.6545
21.4644
206537920139205725571332188
30.6743
gduggal-bwavardINDELD1_5map_l100_m2_e1homalt
97.1870
94.8387
99.6546
75.9352
5883257722
100.0000
ckim-dragenINDELI16_PLUSlowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
97.8216
96.0549
99.6546
66.2784
5602357722
100.0000
ckim-dragenINDELD1_5map_sirenhomalt
99.2693
98.8870
99.6546
81.5458
115513115443
75.0000
ltrigg-rtg2INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
98.6112
97.5894
99.6546
48.0405
720617872142515
60.0000
ltrigg-rtg1INDELI1_5lowcmp_SimpleRepeat_quadTR_11to50hetalt
98.7133
97.7896
99.6546
56.8394
110625115444
100.0000
ltrigg-rtg1INDEL*lowcmp_AllRepeats_lt51bp_gt95identity_merged*
98.6899
97.7438
99.6546
70.7311
92318213192612321168
52.3364
ckim-vqsrINDEL*HG002complexvar*
99.2578
98.8640
99.6548
58.2159
7606487475924263222
84.4106