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Explore HG002 comparison results

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Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1343 1344 1345 1346 1347 1348 1349 1350 1351 ... 1720 1721 » 67301-67350 / 86044 show all
ndellapenna-hhga	SNP	*	lowcmp_SimpleRepeat_quadTR_11to50	het	99.2051	98.7842	99.6296	37.6999	11294	139	11296	42	20	47.6190
gduggal-bwaplat	INDEL	I1_5	map_l150_m2_e0	*	68.1876	51.8304	99.6296	96.3966	269	250	269	1	0	0.0000
astatham-gatk	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.7617	99.8940	99.6298	72.6774	1884	2	1884	7	5	71.4286
ckim-gatk	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.7617	99.8940	99.6298	72.7247	1884	2	1884	7	5	71.4286
ckim-vqsr	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.7617	99.8940	99.6298	72.7247	1884	2	1884	7	5	71.4286
dgrover-gatk	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.7617	99.8940	99.6298	72.7364	1884	2	1884	7	5	71.4286
jmaeng-gatk	SNP	*	*	het	99.6262	99.6225	99.6299	27.1537	1866514	7073	1866391	6934	179	2.5815
rpoplin-dv42	SNP	ti	lowcmp_AllRepeats_51to200bp_gt95identity_merged	*	99.5532	99.4766	99.6299	68.0748	3231	17	3230	12	5	41.6667
jli-custom	SNP	tv	HG002compoundhet	*	99.6414	99.6526	99.6301	48.9851	8892	31	8889	33	14	42.4242
rpoplin-dv42	SNP	tv	segdup	homalt	99.7378	99.8456	99.6302	90.4939	3233	5	3233	12	12	100.0000
ndellapenna-hhga	SNP	tv	map_l125_m2_e0	het	98.8271	98.0368	99.6302	69.6751	10237	205	10237	38	16	42.1053
raldana-dualsentieon	INDEL	I1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	98.1995	96.8094	99.6302	71.4676	15080	497	15087	56	47	83.9286
raldana-dualsentieon	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*	98.3801	97.1609	99.6303	75.8203	6468	189	6468	24	4	16.6667
ltrigg-rtg1	SNP	*	map_l150_m0_e0	het	97.3195	95.1134	99.6305	65.8586	7552	388	7549	28	6	21.4286
ghariani-varprowl	SNP	*	map_l150_m1_e0	homalt	98.8738	98.1283	99.6307	72.3027	11062	211	11062	41	25	60.9756
asubramanian-gatk	INDEL	I1_5	*	het	99.1412	98.6564	99.6308	61.4273	77979	1062	77980	289	149	51.5571
hfeng-pmm1	SNP	ti	map_l100_m0_e0	*	99.4038	99.1778	99.6308	67.2084	21592	179	21589	80	22	27.5000
jmaeng-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	hetalt	97.1401	94.7708	99.6309	23.4581	6470	357	6479	24	24	100.0000
ndellapenna-hhga	INDEL	I1_5	lowcmp_SimpleRepeat_homopolymer_6to10	het	98.9373	98.2533	99.6310	67.7611	1350	24	1350	5	1	20.0000
bgallagher-sentieon	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	hetalt	96.1489	92.9019	99.6311	33.4986	13036	996	13232	49	48	97.9592
ckim-dragen	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	hetalt	96.1413	92.8877	99.6311	33.7242	13034	998	13234	49	49	100.0000
dgrover-gatk	INDEL	*	HG002complexvar	homalt	99.7765	99.9223	99.6312	57.3581	27006	21	27016	100	96	96.0000
hfeng-pmm2	INDEL	*	*	het	99.3911	99.1521	99.6313	58.9414	192487	1646	192126	711	412	57.9466
asubramanian-gatk	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.1530	98.6794	99.6313	77.5757	1345	18	1351	5	3	60.0000
ckim-vqsr	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	hetalt	97.2095	94.9026	99.6314	23.5322	6479	348	6488	24	24	100.0000
ckim-isaac	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	94.6743	90.1869	99.6315	70.8673	1351	147	1352	5	3	60.0000
ckim-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	hetalt	97.2173	94.9172	99.6315	23.5294	6480	347	6489	24	24	100.0000
bgallagher-sentieon	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	hetalt	96.1646	92.9308	99.6316	30.7725	12791	973	12982	48	48	100.0000
ckim-dragen	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.6327	99.6337	99.6317	78.3060	544	2	541	2	2	100.0000
gduggal-snapfb	SNP	ti	map_l250_m2_e1	homalt	95.4425	91.5914	99.6317	92.4268	1623	149	1623	6	5	83.3333
gduggal-bwavard	INDEL	*	map_siren	homalt	95.6313	91.9397	99.6318	70.4973	2441	214	2435	9	6	66.6667
jmaeng-gatk	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	99.8156	100.0000	99.6318	74.2657	1353	0	1353	5	3	60.0000
bgallagher-sentieon	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	hetalt	96.3117	93.2057	99.6319	25.1721	7545	550	7579	28	28	100.0000
asubramanian-gatk	INDEL	D6_15	lowcmp_SimpleRepeat_quadTR_11to50	het	98.9657	98.3082	99.6321	61.0275	1627	28	1625	6	3	50.0000
bgallagher-sentieon	SNP	*	map_l250_m1_e0	homalt	99.2870	98.9444	99.6321	85.1090	2437	26	2437	9	7	77.7778
jli-custom	SNP	ti	HG002compoundhet	het	99.6793	99.7265	99.6321	39.4553	9479	26	9479	35	14	40.0000
ndellapenna-hhga	SNP	ti	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	99.1301	98.6331	99.6322	53.5853	17607	244	17606	65	30	46.1538
gduggal-bwaplat	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	88.6934	79.9189	99.6323	81.5479	4334	1089	4335	16	15	93.7500
gduggal-bwaplat	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	88.6934	79.9189	99.6323	81.5479	4334	1089	4335	16	15	93.7500
astatham-gatk	SNP	tv	map_l150_m2_e1	*	91.6416	84.8374	99.6324	80.3148	9758	1744	9756	36	13	36.1111
ckim-dragen	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	hetalt	96.9831	94.4710	99.6324	29.8141	10491	614	10571	39	39	100.0000
raldana-dualsentieon	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	hetalt	94.8795	90.5594	99.6324	53.1842	259	27	271	1	1	100.0000
ltrigg-rtg2	SNP	ti	map_l250_m0_e0	het	92.9143	87.0450	99.6324	79.6863	813	121	813	3	0	0.0000
astatham-gatk	INDEL	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	hetalt	97.7545	95.9460	99.6325	60.1730	14792	625	14910	55	54	98.1818
asubramanian-gatk	SNP	*	lowcmp_SimpleRepeat_triTR_11to50	homalt	99.3592	99.0869	99.6329	31.6608	2713	25	2714	10	1	10.0000
ltrigg-rtg2	INDEL	I1_5	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.4887	99.3450	99.6329	63.1294	1365	9	1357	5	1	20.0000
cchapple-custom	SNP	*	lowcmp_SimpleRepeat_triTR_11to50	*	99.6397	99.6465	99.6329	33.8966	7329	26	7327	27	8	29.6296
ltrigg-rtg1	SNP	*	lowcmp_SimpleRepeat_triTR_11to50	het	99.6541	99.6750	99.6331	31.4341	4601	15	4616	17	2	11.7647
ltrigg-rtg1	SNP	tv	map_l125_m2_e1	het	98.7185	97.8205	99.6332	61.5213	10323	230	10322	38	5	13.1579
egarrison-hhga	SNP	ti	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.5195	99.4061	99.6332	48.7604	10042	60	10049	37	25	67.5676

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