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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecision Frac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
66301-66350 / 86044 show all
ckim-vqsrSNPtilowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
99.5068
99.4678
99.5459
59.1769
177569517755816
7.4074
hfeng-pmm1SNPtvmap_l150_m2_e1*
99.3334
99.1219
99.5459
75.2491
11401101113995214
26.9231
ltrigg-rtg1INDELD1_5HG002compoundhethetalt
96.9361
94.4597
99.5459
61.8378
965056696454444
100.0000
mlin-fermikitSNPti**
98.9073
98.2768
99.5460
14.9446
204958135937204957293488085
86.4891
astatham-gatkSNP*map_l150_m1_e0het
86.2499
76.0872
99.5460
82.9944
146974619146916726
38.8060
ltrigg-rtg1INDELD6_15lowcmp_SimpleRepeat_diTR_51to200hetalt
85.9189
75.5734
99.5461
25.8137
65921365833
100.0000
jli-customSNP*lowcmp_SimpleRepeat_triTR_11to50het
99.6647
99.7834
99.5462
33.7248
4606104607212
9.5238
bgallagher-sentieonINDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
99.6226
99.6991
99.5463
74.7408
3313610033130151120
79.4702
hfeng-pmm3SNPtvsegduphet
99.6218
99.6974
99.5464
90.8847
5271165267240
0.0000
cchapple-customINDELD6_15lowcmp_SimpleRepeat_triTR_11to50homalt
99.6602
99.7743
99.5465
28.6408
442143922
100.0000
rpoplin-dv42SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
99.2090
98.8739
99.5465
84.4225
439543921
50.0000
raldana-dualsentieonINDEL*HG002complexvarhomalt
99.7249
99.9038
99.5467
56.9673
270012627010123119
96.7480
gduggal-bwafbINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
93.4068
87.9802
99.5467
30.4101
712297321961010
100.0000
ckim-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
99.5016
99.4565
99.5467
86.5782
10986109854
80.0000
ckim-vqsrSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
99.5016
99.4565
99.5467
86.5782
10986109854
80.0000
dgrover-gatkINDEL*lowcmp_SimpleRepeat_diTR_11to50hetalt
97.5627
95.6563
99.5467
33.3070
10020455101024645
97.8261
gduggal-bwavardINDELI6_15*homalt
80.3317
67.3345
99.5468
32.9387
4201203841731915
78.9474
astatham-gatkINDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_merged*
99.3672
99.1883
99.5468
74.2740
6390852363921291257
88.3162
gduggal-bwaplatINDELD6_15lowcmp_SimpleRepeat_quadTR_11to50hetalt
85.1332
74.3655
99.5470
43.0323
87930387944
100.0000
ltrigg-rtg2INDELI6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
98.3982
97.2756
99.5471
54.5040
30358530771413
92.8571
jlack-gatkINDELI1_5lowcmp_SimpleRepeat_homopolymer_6to10*
99.3594
99.1723
99.5472
71.1298
2636222638126
50.0000
qzeng-customSNP*map_sirenhomalt
92.7642
86.8464
99.5474
49.2732
47901725547073214193
90.1869
qzeng-customSNPtimap_l250_m0_e0homalt
67.7742
51.3761
99.5475
94.9738
22421222011
100.0000
jlack-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhetalt
96.0039
92.7039
99.5475
76.9311
2161722011
100.0000
dgrover-gatkINDELD1_5segdup*
99.5471
99.5467
99.5475
94.9619
10985110052
40.0000
ckim-dragenSNP*lowcmp_SimpleRepeat_quadTR_11to50het
99.6905
99.8338
99.5476
42.3216
114141911441524
7.6923
ckim-gatkSNPtvHG002compoundhethet
99.2595
98.9728
99.5478
55.8932
46254846232113
61.9048
astatham-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
96.9771
94.5358
99.5479
27.9803
678239268263130
96.7742
ltrigg-rtg1INDELI1_5lowcmp_AllRepeats_lt51bp_gt95identity_merged*
98.6359
97.7403
99.5481
71.8594
15225352154207031
44.2857
gduggal-snapvardSNPtisegduphomalt
98.6062
97.6815
99.5484
88.2591
733117472753332
96.9697
egarrison-hhgaSNP*map_l250_m1_e0*
98.6376
97.7430
99.5487
87.7148
705916370593215
46.8750
gduggal-snapvardSNPtimap_l125_m0_e0homalt
96.9471
94.4778
99.5488
70.5648
424324841921915
78.9474
jmaeng-gatkINDELI1_5lowcmp_SimpleRepeat_diTR_11to50het
99.1862
98.8261
99.5489
78.4824
134716132463
50.0000
gduggal-snapvardSNPtvmap_l250_m2_e1homalt
96.5134
93.6575
99.5490
88.2016
8866088342
50.0000
ndellapenna-hhgaSNP*HG002compoundhethet
98.0271
96.5510
99.5491
42.9549
13689489136876236
58.0645
eyeh-varpipeINDELD1_5lowcmp_SimpleRepeat_triTR_11to50het
98.7842
98.0306
99.5494
36.1496
2240452430116
54.5455
ckim-vqsrINDELD6_15lowcmp_SimpleRepeat_triTR_11to50homalt
99.6618
99.7743
99.5495
35.0877
442144222
100.0000
ltrigg-rtg2INDEL*func_cds*
99.3248
99.1011
99.5495
36.5714
441444220
0.0000
ltrigg-rtg1INDELD16_PLUSlowcmp_SimpleRepeat_quadTR_11to50homalt
98.4586
97.3913
99.5495
58.8889
224622111
100.0000
raldana-dualsentieonINDEL*func_cds*
99.2118
98.8764
99.5495
41.6557
440544220
0.0000
jli-customINDEL*func_cds*
99.4376
99.3258
99.5495
41.4248
442344221
50.0000
ckim-dragenINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
98.6521
97.7707
99.5495
74.2085
9212188443
75.0000
ckim-gatkINDELD6_15lowcmp_SimpleRepeat_triTR_11to50homalt
99.6618
99.7743
99.5495
35.0877
442144222
100.0000
jli-customINDELI1_5map_l100_m1_e0*
99.2513
98.9544
99.5499
81.4397
132514132763
50.0000
hfeng-pmm3SNPtvmap_l125_m1_e0*
99.5034
99.4568
99.5500
69.7161
1592987159277210
13.8889
ndellapenna-hhgaSNPtvmap_l150_m2_e0het
98.5727
97.6145
99.5500
73.8403
707917370793213
40.6250
ltrigg-rtg1INDELI16_PLUSHG002compoundhethetalt
85.8044
75.3942
99.5501
38.3274
1578515154977
100.0000
jmaeng-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhet
99.2155
98.8831
99.5502
52.7537
2656302656121
8.3333
bgallagher-sentieonINDELD1_5*homalt
99.7512
99.9530
99.5502
62.3527
489032348908221219
99.0950
jmaeng-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
99.3974
99.2449
99.5503
79.5805
4206324206195
26.3158