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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1322 1323 1324 1325 1326 1327 1328 1329 1330 ... 1720 1721 » 66251-66300 / 86044 show all
gduggal-bwaplat	SNP	tv	map_l150_m2_e0	*	67.9659	51.5984	99.5413	91.9142	5859	5496	5859	27	5	18.5185
jli-custom	INDEL	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	99.1076	98.6776	99.5414	71.9967	93200	1249	93118	429	358	83.4499
dgrover-gatk	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.7015	99.8620	99.5415	64.0336	2171	3	2171	10	0	0.0000
jli-custom	SNP	tv	map_l100_m1_e0	*	99.4197	99.2980	99.5417	62.1631	24329	172	24328	112	30	26.7857
asubramanian-gatk	INDEL	D1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	99.1330	98.7273	99.5420	75.3696	32813	423	32819	151	102	67.5497
gduggal-snapvard	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	98.4743	97.4291	99.5421	56.2675	1099	29	1087	5	3	60.0000
jli-custom	SNP	ti	map_l100_m0_e0	*	99.2096	98.8792	99.5422	63.1044	21527	244	21527	99	35	35.3535
jpowers-varprowl	SNP	tv	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.2932	99.0454	99.5422	62.8527	6952	67	6958	32	4	12.5000
ltrigg-rtg1	INDEL	*	*	hetalt	95.1862	91.1955	99.5422	68.0582	23015	2222	23702	109	107	98.1651
dgrover-gatk	INDEL	*	*	het	99.5990	99.6559	99.5422	61.2168	193465	668	193091	888	555	62.5000
ckim-dragen	INDEL	*	lowcmp_AllRepeats_51to200bp_gt95identity_merged	hetalt	92.8661	87.0293	99.5422	40.0515	3328	496	3479	16	16	100.0000
ckim-dragen	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	homalt	98.7514	97.9730	99.5423	84.3201	435	9	435	2	2	100.0000
jmaeng-gatk	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	99.2070	98.8739	99.5423	76.1072	439	5	435	2	0	0.0000
ckim-dragen	SNP	ti	lowcmp_SimpleRepeat_quadTR_11to50	het	99.6674	99.7924	99.5426	42.2165	6730	14	6747	31	2	6.4516
dgrover-gatk	INDEL	D1_5	*	hetalt	97.3217	95.1977	99.5427	63.5299	9753	492	9795	45	43	95.5556
jmaeng-gatk	INDEL	*	lowcmp_SimpleRepeat_quadTR_11to50	*	99.1711	98.8017	99.5433	59.8357	19624	238	19617	90	58	64.4444
ltrigg-rtg2	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	hetalt	97.9874	96.4793	99.5434	33.1326	7810	285	7849	36	36	100.0000
hfeng-pmm1	SNP	ti	lowcmp_AllRepeats_51to200bp_gt95identity_merged	het	98.2228	96.9368	99.5434	64.5886	1962	62	1962	9	0	0.0000
ckim-dragen	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	*	97.9362	96.3801	99.5434	90.9728	213	8	218	1	1	100.0000
ckim-dragen	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*	99.3735	99.2041	99.5436	81.7204	4113	33	4144	19	8	42.1053
gduggal-snapfb	SNP	*	map_l150_m1_e0	homalt	97.1242	94.8195	99.5437	79.7473	10689	584	10689	49	20	40.8163
asubramanian-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.2196	98.8975	99.5437	78.3395	1525	17	1527	7	4	57.1429
asubramanian-gatk	SNP	*	map_l250_m2_e1	*	32.0765	19.1186	99.5437	98.3572	1527	6460	1527	7	1	14.2857
rpoplin-dv42	SNP	ti	map_l100_m1_e0	het	99.3390	99.1350	99.5438	63.8948	29683	259	29675	136	82	60.2941
hfeng-pmm2	SNP	tv	segdup	*	99.6780	99.8125	99.5439	91.3819	8516	16	8512	39	4	10.2564
dgrover-gatk	INDEL	D1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	99.3985	99.2535	99.5440	74.5809	63950	481	63963	293	257	87.7133
jlack-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	99.6198	99.6956	99.5441	80.5441	655	2	655	3	1	33.3333
astatham-gatk	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	hetalt	96.9798	94.5444	99.5441	27.3611	6724	388	6768	31	30	96.7742
rpoplin-dv42	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	99.6198	99.6956	99.5441	79.9635	655	2	655	3	3	100.0000
jlack-gatk	SNP	*	map_l250_m1_e0	homalt	98.5442	97.5639	99.5443	85.9993	2403	60	2403	11	8	72.7273
ltrigg-rtg2	SNP	tv	lowcmp_SimpleRepeat_diTR_11to50	het	99.3508	99.1580	99.5443	63.5414	3062	26	3058	14	2	14.2857
ndellapenna-hhga	INDEL	I1_5	*	*	99.2393	98.9360	99.5445	55.9242	149061	1603	149032	682	431	63.1965
ndellapenna-hhga	SNP	tv	map_l150_m1_e0	het	98.5385	97.5525	99.5446	72.4747	6776	170	6776	31	13	41.9355
dgrover-gatk	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	hetalt	97.0467	94.6710	99.5447	27.5976	6733	379	6777	31	30	96.7742
ckim-dragen	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331	hetalt	96.4901	93.6175	99.5447	31.6449	8698	593	8745	40	40	100.0000
ckim-dragen	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	hetalt	96.4901	93.6175	99.5447	31.6449	8698	593	8745	40	40	100.0000
ltrigg-rtg1	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_11to50	het	98.9876	98.4366	99.5448	47.2044	6611	105	6561	30	6	20.0000
gduggal-snapvard	SNP	tv	map_l250_m2_e0	homalt	96.5358	93.7033	99.5449	88.1007	878	59	875	4	2	50.0000
astatham-gatk	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	*	98.0766	96.6507	99.5451	88.1460	2626	91	2626	12	11	91.6667
ltrigg-rtg2	INDEL	I6_15	lowcmp_SimpleRepeat_diTR_11to50	hetalt	98.4334	97.3461	99.5452	51.1660	1724	47	1751	8	7	87.5000
rpoplin-dv42	SNP	*	map_l250_m1_e0	homalt	98.6481	97.7670	99.5453	86.6597	2408	55	2408	11	11	100.0000
ltrigg-rtg2	INDEL	D16_PLUS	lowcmp_SimpleRepeat_quadTR_11to50	homalt	98.0103	96.5217	99.5455	56.9472	222	8	219	1	1	100.0000
ckim-dragen	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	99.7722	100.0000	99.5455	79.8658	657	0	657	3	1	33.3333
jli-custom	INDEL	*	map_siren	hetalt	93.3352	87.8543	99.5455	87.1345	217	30	219	1	0	0.0000
gduggal-bwaplat	SNP	tv	map_l150_m1_e0	*	66.7357	50.1924	99.5456	91.4813	5477	5435	5477	25	5	20.0000
ckim-vqsr	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.5135	99.4812	99.5457	78.2406	1534	8	1534	7	5	71.4286
rpoplin-dv42	SNP	*	map_l250_m2_e0	homalt	98.7237	97.9151	99.5458	87.7612	2630	56	2630	12	12	100.0000
ltrigg-rtg2	INDEL	D1_5	HG002compoundhet	hetalt	98.0424	96.5838	99.5458	62.4013	9867	349	9863	45	45	100.0000
hfeng-pmm3	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	*	97.6143	95.7565	99.5458	41.0573	19722	874	19723	90	82	91.1111
gduggal-snapvard	SNP	tv	lowcmp_SimpleRepeat_quadTR_11to50	homalt	98.1212	96.7368	99.5458	35.0221	2668	90	2630	12	9	75.0000

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