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Explore HG002 comparison results

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Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1314 1315 1316 1317 1318 1319 1320 1321 1322 ... 1720 1721 » 65851-65900 / 86044 show all
gduggal-snapfb	SNP	ti	map_l125_m0_e0	homalt	96.3354	93.3645	99.5017	80.4209	4193	298	4193	21	10	47.6190
ltrigg-rtg1	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	hetalt	96.0808	92.8872	99.5018	43.2116	12785	979	12981	65	64	98.4615
dgrover-gatk	INDEL	D6_15	lowcmp_AllRepeats_lt51bp_gt95identity_merged	hetalt	97.9811	96.5062	99.5018	33.8856	6574	238	6591	33	32	96.9697
gduggal-bwaplat	SNP	*	lowcmp_SimpleRepeat_homopolymer_6to10	het	93.5407	88.2533	99.5021	62.9815	9782	1302	9792	49	16	32.6531
ltrigg-rtg2	INDEL	I1_5	map_l150_m2_e1	homalt	99.2605	99.0196	99.5025	85.2747	202	2	200	1	0	0.0000
bgallagher-sentieon	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331	hetalt	96.5254	93.7213	99.5026	29.5295	7553	506	7601	38	37	97.3684
bgallagher-sentieon	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	hetalt	96.5254	93.7213	99.5026	29.5295	7553	506	7601	38	37	97.3684
mlin-fermikit	SNP	*	*	*	98.8629	98.2311	99.5029	16.3803	3000602	54032	3000527	14990	12200	81.3876
ckim-dragen	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.5527	99.6020	99.5035	66.4780	1001	4	1002	5	3	60.0000
jlack-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331	hetalt	94.6208	90.1948	99.5035	32.1162	8380	911	8417	42	38	90.4762
jlack-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	hetalt	94.6208	90.1948	99.5035	32.1162	8380	911	8417	42	38	90.4762
rpoplin-dv42	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	98.9414	98.3852	99.5039	60.3844	8225	135	8224	41	36	87.8049
rpoplin-dv42	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	98.9414	98.3852	99.5039	60.3844	8225	135	8224	41	36	87.8049
asubramanian-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	het	99.0398	98.5800	99.5039	51.7553	1805	26	1805	9	1	11.1111
jli-custom	INDEL	D6_15	HG002complexvar	het	98.7528	98.0128	99.5040	56.9844	3058	62	3009	15	10	66.6667
rpoplin-dv42	INDEL	I1_5	HG002complexvar	het	99.3340	99.1643	99.5043	57.7801	18037	152	18065	90	80	88.8889
bgallagher-sentieon	INDEL	D1_5	lowcmp_AllRepeats_51to200bp_gt95identity_merged	hetalt	92.5782	86.5532	99.5046	32.0000	1577	245	1607	8	7	87.5000
egarrison-hhga	SNP	ti	map_l250_m2_e1	het	98.4531	97.4235	99.5046	89.2351	3214	85	3214	16	6	37.5000
ltrigg-rtg2	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	99.4163	99.3280	99.5048	58.5822	3252	22	3215	16	13	81.2500
jli-custom	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	hetalt	95.1973	91.2471	99.5050	29.3294	1178	113	1206	6	5	83.3333
ckim-dragen	INDEL	D1_5	lowcmp_AllRepeats_51to200bp_gt95identity_merged	hetalt	92.4526	86.3337	99.5050	31.4964	1573	249	1608	8	8	100.0000
gduggal-bwafb	INDEL	D1_5	map_l100_m2_e0	homalt	99.1786	98.8543	99.5050	85.3976	604	7	603	3	3	100.0000
ckim-vqsr	INDEL	I1_5	lowcmp_SimpleRepeat_quadTR_11to50	*	98.6815	97.8712	99.5052	68.1063	3816	83	3821	19	14	73.6842
ltrigg-rtg1	INDEL	*	lowcmp_SimpleRepeat_quadTR_11to50	*	98.8166	98.1371	99.5056	55.0392	19492	370	19523	97	32	32.9897
ckim-vqsr	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331	hetalt	96.8550	94.3417	99.5058	29.2966	7603	456	7651	38	38	100.0000
ckim-vqsr	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	hetalt	96.8550	94.3417	99.5058	29.2966	7603	456	7651	38	38	100.0000
bgallagher-sentieon	INDEL	I1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	99.4743	99.4428	99.5058	77.9305	6068	34	6040	30	14	46.6667
hfeng-pmm3	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	90.9506	83.7500	99.5058	87.7720	603	117	604	3	1	33.3333
ltrigg-rtg2	SNP	*	func_cds	*	99.6865	99.8678	99.5059	22.3605	18126	24	18125	90	1	1.1111
ckim-gatk	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331	hetalt	96.8615	94.3541	99.5059	29.2939	7604	455	7652	38	38	100.0000
ckim-gatk	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	hetalt	96.8615	94.3541	99.5059	29.2939	7604	455	7652	38	38	100.0000
ckim-gatk	INDEL	I1_5	map_siren	homalt	99.5056	99.5050	99.5062	78.6204	1206	6	1209	6	4	66.6667
gduggal-bwaplat	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	90.0576	82.2478	99.5062	84.1820	3220	695	3224	16	14	87.5000
gduggal-bwaplat	SNP	tv	*	het	98.5255	97.5640	99.5062	36.2003	577282	14414	577577	2866	351	12.2470
qzeng-custom	SNP	ti	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	99.3033	99.1013	99.5062	65.8995	1213	11	1209	6	3	50.0000
gduggal-snapfb	SNP	tv	map_l125_m2_e1	homalt	97.8321	96.2134	99.5062	78.2651	5844	230	5844	29	7	24.1379
hfeng-pmm1	INDEL	D6_15	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.6018	99.6976	99.5062	56.7205	3627	11	3627	18	18	100.0000
dgrover-gatk	SNP	*	segdup	*	99.6727	99.8397	99.5063	90.5121	28022	45	28016	139	12	8.6331
jli-custom	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	hetalt	98.9021	98.3051	99.5064	29.1608	928	16	1008	5	5	100.0000
hfeng-pmm2	SNP	*	lowcmp_AllRepeats_51to200bp_gt95identity_merged	*	98.4084	97.3342	99.5065	66.1830	4637	127	4638	23	1	4.3478
ltrigg-rtg2	INDEL	D1_5	HG002complexvar	het	99.3002	99.0946	99.5066	51.3766	20577	188	20368	101	44	43.5644
ltrigg-rtg2	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	*	98.1115	96.7548	99.5067	50.1900	36672	1230	36914	183	147	80.3279
qzeng-custom	SNP	tv	*	het	99.3391	99.1721	99.5067	29.7409	586805	4899	585578	2903	302	10.4030
qzeng-custom	INDEL	I1_5	lowcmp_SimpleRepeat_homopolymer_6to10	het	98.9865	98.4716	99.5069	53.0976	1353	21	15941	79	10	12.6582
eyeh-varpipe	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.4124	99.3179	99.5070	45.2160	1456	10	1413	7	2	28.5714
gduggal-bwaplat	INDEL	D1_5	map_l100_m2_e0	homalt	79.4494	66.1211	99.5074	87.9739	404	207	404	2	1	50.0000
ckim-gatk	INDEL	D1_5	map_l100_m2_e0	homalt	99.3443	99.1817	99.5074	84.1571	606	5	606	3	2	66.6667
ckim-vqsr	INDEL	D1_5	map_l100_m2_e0	homalt	99.3443	99.1817	99.5074	84.1571	606	5	606	3	2	66.6667
dgrover-gatk	INDEL	I1_5	map_siren	homalt	99.6298	99.7525	99.5074	78.6951	1209	3	1212	6	4	66.6667
jpowers-varprowl	INDEL	*	func_cds	homalt	94.1725	89.3805	99.5074	31.4189	202	24	202	1	1	100.0000

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