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Explore HG002 comparison results

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Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1313 1314 1315 1316 1317 1318 1319 1320 1321 ... 1720 1721 » 65801-65850 / 86044 show all
egarrison-hhga	INDEL	I1_5	*	het	99.4365	99.3775	99.4956	58.7039	78549	492	78511	398	185	46.4824
cchapple-custom	INDEL	I1_5	lowcmp_SimpleRepeat_diTR_11to50	*	97.8094	96.1793	99.4957	50.2286	5513	219	5524	28	25	89.2857
asubramanian-gatk	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	99.5315	99.5674	99.4957	65.2740	1381	6	1381	7	0	0.0000
bgallagher-sentieon	INDEL	D1_5	lowcmp_SimpleRepeat_diTR_11to50	hetalt	96.8780	94.3944	99.4959	25.6896	6500	386	6513	33	33	100.0000
gduggal-bwaplat	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	84.3756	73.2446	99.4960	78.1450	991	362	987	5	3	60.0000
asubramanian-gatk	INDEL	I1_5	lowcmp_SimpleRepeat_quadTR_11to50	*	98.7291	97.9738	99.4961	65.8453	3820	79	4344	22	13	59.0909
ckim-gatk	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	hetalt	97.8135	96.1864	99.4965	31.6116	908	36	988	5	5	100.0000
ckim-vqsr	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	hetalt	97.8135	96.1864	99.4965	31.6116	908	36	988	5	5	100.0000
anovak-vg	SNP	ti	*	homalt	99.1281	98.7623	99.4967	15.3503	793100	9939	790097	3997	3582	89.6172
rpoplin-dv42	SNP	ti	map_l125_m1_e0	*	99.2894	99.0830	99.4967	68.8733	29066	269	29062	147	101	68.7075
ckim-vqsr	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	99.6400	99.7837	99.4968	65.7726	1384	3	1384	7	0	0.0000
jlack-gatk	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	hetalt	88.1690	79.1569	99.4968	31.0362	1352	356	1384	7	7	100.0000
hfeng-pmm1	INDEL	I1_5	map_l100_m2_e1	het	98.3148	97.1605	99.4969	84.1760	787	23	791	4	0	0.0000
dgrover-gatk	INDEL	*	lowcmp_AllRepeats_51to200bp_gt95identity_merged	hetalt	94.0819	89.2259	99.4969	40.1872	3412	412	3560	18	17	94.4444
ltrigg-rtg1	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	hetalt	96.0483	92.8307	99.4969	46.1918	13026	1006	13250	67	66	98.5075
dgrover-gatk	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	hetalt	97.9231	96.3983	99.4970	32.4728	910	34	989	5	5	100.0000
astatham-gatk	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	hetalt	97.9231	96.3983	99.4970	32.0574	910	34	989	5	5	100.0000
bgallagher-sentieon	INDEL	D6_15	*	hetalt	96.5632	93.7974	99.4971	32.7057	7667	507	7716	39	38	97.4359
ckim-gatk	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	99.6761	99.8558	99.4971	65.7565	1385	2	1385	7	0	0.0000
ckim-gatk	SNP	ti	HG002complexvar	hetalt	97.5369	95.6522	99.4975	39.5137	198	9	198	1	1	100.0000
eyeh-varpipe	SNP	*	map_l125_m2_e1	hetalt	99.7481	100.0000	99.4975	71.0756	30	0	198	1	0	0.0000
jli-custom	SNP	ti	map_l100_m2_e1	het	99.3237	99.1505	99.4976	64.3340	30697	263	30695	155	38	24.5161
qzeng-custom	SNP	*	lowcmp_SimpleRepeat_triTR_11to50	het	99.2828	99.0685	99.4980	45.3418	4573	43	4559	23	2	8.6957
hfeng-pmm1	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*	97.8177	96.1933	99.4980	48.4397	21403	847	21404	108	89	82.4074
egarrison-hhga	SNP	ti	map_l250_m2_e0	het	98.4630	97.4493	99.4980	89.1481	3171	83	3171	16	6	37.5000
gduggal-snapplat	INDEL	D1_5	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	94.1021	89.2612	99.4983	58.0297	9085	1093	9122	46	12	26.0870
asubramanian-gatk	INDEL	I1_5	lowcmp_SimpleRepeat_quadTR_11to50	het	98.6857	97.8861	99.4985	72.2979	1667	36	1984	10	2	20.0000
hfeng-pmm2	INDEL	D1_5	lowcmp_SimpleRepeat_diTR_11to50	het	98.4016	97.3287	99.4985	47.5257	10129	278	10118	51	47	92.1569
cchapple-custom	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	het	97.7466	96.0553	99.4986	53.1009	2362	97	6945	35	29	82.8571
rpoplin-dv42	INDEL	I6_15	HG002complexvar	homalt	98.6717	97.8583	99.4987	53.9792	1188	26	1191	6	5	83.3333
egarrison-hhga	SNP	tv	map_l150_m0_e0	het	98.6520	97.8192	99.4991	79.4500	2781	62	2781	14	5	35.7143
bgallagher-sentieon	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	99.5497	99.6000	99.4995	76.1480	2988	12	2982	15	4	26.6667
gduggal-bwaplat	SNP	tv	map_l150_m2_e1	*	68.1907	51.8692	99.4997	91.8775	5966	5536	5966	30	5	16.6667
dgrover-gatk	INDEL	D1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.7221	99.9452	99.4999	76.1475	21887	12	21887	110	109	99.0909
ckim-vqsr	INDEL	D6_15	*	hetalt	96.8555	94.3479	99.5000	32.9551	7712	462	7761	39	39	100.0000
ckim-isaac	INDEL	D1_5	map_l125_m1_e0	homalt	72.4954	57.0201	99.5000	79.8184	199	150	199	1	1	100.0000
ckim-isaac	SNP	ti	map_l250_m0_e0	homalt	62.5786	45.6422	99.5000	87.4451	199	237	199	1	1	100.0000
rpoplin-dv42	INDEL	I1_5	lowcmp_SimpleRepeat_quadTR_51to200	hetalt	93.1476	87.5576	99.5000	42.6934	190	27	199	1	1	100.0000
ckim-gatk	INDEL	D6_15	*	hetalt	96.8620	94.3602	99.5001	32.9523	7713	461	7762	39	39	100.0000
ltrigg-rtg1	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	97.3085	95.2111	99.5005	59.4918	13917	700	13943	70	38	54.2857
jli-custom	INDEL	*	lowcmp_AllRepeats_51to200bp_gt95identity_merged	hetalt	94.5613	90.0889	99.5008	36.1205	3445	379	3588	18	17	94.4444
hfeng-pmm2	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	90.5375	83.0556	99.5008	87.1910	598	122	598	3	0	0.0000
bgallagher-sentieon	INDEL	*	lowcmp_SimpleRepeat_quadTR_11to50	*	99.4660	99.4311	99.5010	59.2336	19749	113	19742	99	60	60.6061
ltrigg-rtg1	INDEL	D1_5	map_l100_m2_e1	het	97.1325	94.8738	99.5012	74.5666	1203	65	1197	6	0	0.0000
jmaeng-gatk	SNP	tv	*	het	99.5410	99.5807	99.5013	31.3482	589215	2481	589142	2953	52	1.7609
gduggal-snapfb	SNP	tv	map_l125_m2_e0	homalt	97.8112	96.1775	99.5014	78.2474	5787	230	5787	29	7	24.1379
astatham-gatk	INDEL	D6_15	lowcmp_AllRepeats_lt51bp_gt95identity_merged	hetalt	97.9355	96.4181	99.5014	33.6275	6568	244	6585	33	32	96.9697
jmaeng-gatk	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.3525	99.2040	99.5015	66.2630	997	8	998	5	4	80.0000
gduggal-snapvard	SNP	*	segdup	homalt	98.5503	97.6171	99.5016	88.8814	10487	256	10381	52	50	96.1538
jlack-gatk	SNP	*	*	*	99.7200	99.9393	99.5016	23.6335	3052765	1854	3052612	15290	548	3.5840

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