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Explore HG002 comparison results

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Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1312 1313 1314 1315 1316 1317 1318 1319 1320 ... 1720 1721 » 65751-65800 / 86044 show all
hfeng-pmm2	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_51to200	*	97.4314	95.4545	99.4920	57.5943	1176	56	1175	6	5	83.3333
ckim-isaac	SNP	tv	map_l150_m2_e1	het	71.6314	55.9608	99.4920	80.5897	4112	3236	4113	21	6	28.5714
jli-custom	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	hetalt	97.6090	95.7958	99.4921	26.3939	6813	299	6856	35	34	97.1429
hfeng-pmm3	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	*	95.0365	90.9628	99.4922	86.4235	2154	214	2155	11	4	36.3636
bgallagher-sentieon	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.5214	99.5507	99.4922	74.9449	5096	23	5094	26	13	50.0000
hfeng-pmm1	SNP	ti	map_l250_m2_e1	homalt	99.5205	99.5485	99.4924	87.8161	1764	8	1764	9	2	22.2222
gduggal-bwaplat	INDEL	I6_15	lowcmp_SimpleRepeat_quadTR_11to50	hetalt	75.7488	61.1544	99.4924	57.4514	392	249	392	2	2	100.0000
dgrover-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_51to200	homalt	99.4924	99.4924	99.4924	60.6000	196	1	196	1	1	100.0000
ltrigg-rtg2	INDEL	I1_5	map_l150_m2_e0	homalt	99.2481	99.0050	99.4924	85.2434	199	2	196	1	0	0.0000
hfeng-pmm2	SNP	ti	map_l250_m2_e1	homalt	99.5488	99.6050	99.4927	87.8092	1765	7	1765	9	2	22.2222
hfeng-pmm3	SNP	ti	map_l250_m2_e1	homalt	99.5488	99.6050	99.4927	87.7689	1765	7	1765	9	2	22.2222
ndellapenna-hhga	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	99.2048	98.9185	99.4928	63.7700	1372	15	1373	7	2	28.5714
dgrover-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	hetalt	94.0410	89.1557	99.4928	31.2609	1151	140	1177	6	5	83.3333
jmaeng-gatk	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	99.1788	98.8665	99.4930	89.4926	785	9	785	4	4	100.0000
bgallagher-sentieon	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	*	99.4720	99.4510	99.4930	87.3253	2355	13	2355	12	11	91.6667
astatham-gatk	INDEL	D6_15	lowcmp_AllRepeats_51to200bp_gt95identity_merged	hetalt	94.3126	89.6450	99.4931	30.6266	2121	245	2159	11	11	100.0000
ckim-isaac	INDEL	D1_5	lowcmp_SimpleRepeat_diTR_11to50	homalt	94.2777	89.5819	99.4931	26.8704	6492	755	6477	33	25	75.7576
eyeh-varpipe	SNP	ti	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.7221	99.9521	99.4931	42.7028	6265	3	6281	32	9	28.1250
astatham-gatk	INDEL	D1_5	map_l100_m1_e0	homalt	99.4932	99.4932	99.4932	83.1098	589	3	589	3	2	66.6667
ckim-vqsr	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331	*	98.9263	98.3656	99.4933	72.9052	30634	509	30634	156	20	12.8205
ckim-vqsr	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	*	98.9263	98.3656	99.4933	72.9052	30634	509	30634	156	20	12.8205
dgrover-gatk	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*	99.4814	99.4694	99.4934	82.7155	4124	22	4124	21	7	33.3333
bgallagher-sentieon	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	hetalt	97.5924	95.7627	99.4934	31.8370	904	40	982	5	5	100.0000
ckim-dragen	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	*	98.8470	98.2089	99.4934	48.2524	2906	53	2946	15	4	26.6667
hfeng-pmm2	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	*	98.1601	96.8618	99.4937	40.9343	17686	573	17687	90	86	95.5556
cchapple-custom	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	*	99.6621	99.8310	99.4938	54.7565	2954	5	2948	15	1	6.6667
rpoplin-dv42	SNP	tv	lowcmp_AllRepeats_51to200bp_gt95identity_merged	het	99.3435	99.1935	99.4939	70.5690	984	8	983	5	1	20.0000
bgallagher-sentieon	SNP	*	lowcmp_AllRepeats_51to200bp_gt95identity_merged	*	99.2848	99.0764	99.4941	66.4545	4720	44	4720	24	5	20.8333
jli-custom	INDEL	*	lowcmp_SimpleRepeat_diTR_11to50	hetalt	97.1839	94.9785	99.4942	28.3420	9949	526	10032	51	50	98.0392
gduggal-bwafb	SNP	*	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.2945	99.0956	99.4942	40.3814	6684	61	6688	34	20	58.8235
jlack-gatk	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	hetalt	94.4663	89.9219	99.4945	27.8754	6451	723	6495	33	28	84.8485
jli-custom	INDEL	D16_PLUS	lowcmp_AllRepeats_lt51bp_gt95identity_merged	hetalt	98.5010	97.5270	99.4946	34.2043	1262	32	1378	7	7	100.0000
gduggal-snapfb	SNP	tv	map_l100_m2_e1	homalt	98.4024	97.3339	99.4946	73.1383	9054	248	9055	46	9	19.5652
jmaeng-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_diTR_11to50	hetalt	96.7472	94.1475	99.4946	23.8423	6483	403	6496	33	33	100.0000
hfeng-pmm3	SNP	ti	lowcmp_AllRepeats_51to200bp_gt95identity_merged	het	98.3762	97.2826	99.4947	68.4722	1969	55	1969	10	0	0.0000
jpowers-varprowl	SNP	ti	*	het	99.4145	99.3343	99.4948	22.7953	1273353	8534	1273511	6466	293	4.5314
mlin-fermikit	INDEL	*	HG002compoundhet	hetalt	77.7377	63.7887	99.4948	53.3255	16062	9118	16150	82	81	98.7805
jli-custom	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	99.6207	99.7468	99.4949	51.0355	1576	4	1576	8	0	0.0000
ltrigg-rtg2	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_51to200	homalt	98.9834	98.4772	99.4949	54.7945	194	3	197	1	1	100.0000
astatham-gatk	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331	hetalt	97.0717	94.7636	99.4951	30.0679	7637	422	7685	39	38	97.4359
astatham-gatk	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	hetalt	97.0717	94.7636	99.4951	30.0679	7637	422	7685	39	38	97.4359
ltrigg-rtg1	INDEL	I16_PLUS	*	hetalt	85.7294	75.3098	99.4953	51.3953	1580	518	1577	8	8	100.0000
jli-custom	SNP	ti	map_l100_m2_e0	het	99.3179	99.1411	99.4953	64.3096	30359	263	30357	154	38	24.6753
ckim-vqsr	INDEL	D1_5	lowcmp_SimpleRepeat_diTR_11to50	hetalt	96.8165	94.2782	99.4953	23.7106	6492	394	6505	33	33	100.0000
ckim-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_diTR_11to50	hetalt	96.8242	94.2928	99.4953	23.7079	6493	393	6506	33	33	100.0000
gduggal-bwafb	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	96.9845	94.5971	99.4954	76.1070	5130	293	5127	26	10	38.4615
gduggal-bwafb	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	96.9845	94.5971	99.4954	76.1070	5130	293	5127	26	10	38.4615
jpowers-varprowl	SNP	ti	HG002complexvar	homalt	99.7216	99.9488	99.4954	19.7390	193364	99	193412	981	709	72.2732
qzeng-custom	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	99.2401	98.9858	99.4956	77.2155	5368	55	5326	27	13	48.1481
qzeng-custom	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	99.2401	98.9858	99.4956	77.2155	5368	55	5326	27	13	48.1481

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