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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1308 1309 1310 1311 1312 1313 1314 1315 1316 ... 1720 1721 » 65551-65600 / 86044 show all
hfeng-pmm3	INDEL	I16_PLUS	lowcmp_SimpleRepeat_quadTR_11to50	*	98.4375	97.4227	99.4737	74.0968	378	10	378	2	1	50.0000
ltrigg-rtg2	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	99.3589	99.2443	99.4737	85.1185	788	6	756	4	0	0.0000
astatham-gatk	INDEL	D16_PLUS	lowcmp_SimpleRepeat_quadTR_11to50	het	99.1121	98.7531	99.4737	81.8095	396	5	378	2	1	50.0000
gduggal-bwaplat	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	87.3267	77.8234	99.4737	73.5744	379	108	378	2	1	50.0000
gduggal-bwaplat	INDEL	I1_5	map_l150_m2_e1	het	74.5562	59.6215	99.4737	96.5316	189	128	189	1	0	0.0000
ckim-isaac	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	94.2643	89.5735	99.4737	41.3580	189	22	189	1	0	0.0000
ckim-vqsr	INDEL	D16_PLUS	lowcmp_SimpleRepeat_quadTR_11to50	het	99.2375	99.0025	99.4737	82.2678	397	4	378	2	1	50.0000
rpoplin-dv42	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	99.0826	98.6945	99.4737	82.8674	378	5	378	2	1	50.0000
hfeng-pmm3	INDEL	*	map_siren	homalt	99.4733	99.4727	99.4739	78.7290	2641	14	2647	14	9	64.2857
ltrigg-rtg1	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	het	96.9159	94.4855	99.4747	56.3830	7933	463	7953	42	13	30.9524
ndellapenna-hhga	SNP	ti	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.4059	99.3368	99.4750	48.7096	10035	67	10043	53	44	83.0189
astatham-gatk	SNP	tv	map_l100_m0_e0	het	89.5033	81.3487	99.4750	78.3064	5875	1347	5874	31	7	22.5806
bgallagher-sentieon	INDEL	D16_PLUS	lowcmp_SimpleRepeat_quadTR_11to50	het	99.2382	99.0025	99.4751	81.5138	397	4	379	2	1	50.0000
ckim-isaac	SNP	tv	map_l250_m1_e0	*	60.0000	42.9543	99.4751	90.6960	1137	1510	1137	6	1	16.6667
dgrover-gatk	SNP	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	99.6743	99.8742	99.4753	60.5238	55561	70	55550	293	27	9.2150
dgrover-gatk	SNP	ti	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	99.6673	99.8600	99.4754	57.8446	17826	25	17825	94	5	5.3192
mlin-fermikit	INDEL	I1_5	lowcmp_SimpleRepeat_diTR_11to50	hetalt	81.6561	69.2510	99.4755	31.4587	2635	1170	2655	14	14	100.0000
ltrigg-rtg1	INDEL	I1_5	lowcmp_SimpleRepeat_diTR_11to50	*	98.2308	97.0167	99.4755	56.4489	5561	171	5690	30	15	50.0000
ltrigg-rtg2	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	98.4842	97.5124	99.4755	64.3614	588	15	569	3	0	0.0000
egarrison-hhga	SNP	tv	map_l250_m2_e1	*	98.5286	97.5995	99.4757	87.5868	2846	70	2846	15	7	46.6667
hfeng-pmm1	SNP	ti	map_l150_m2_e0	het	99.1156	98.7579	99.4759	76.0299	12721	160	12717	67	17	25.3731
hfeng-pmm2	INDEL	D1_5	lowcmp_SimpleRepeat_diTR_11to50	homalt	99.5103	99.5446	99.4760	35.3827	7214	33	7214	38	38	100.0000
hfeng-pmm3	SNP	tv	map_l100_m0_e0	*	99.4268	99.3775	99.4762	69.0933	11015	69	11014	58	8	13.7931
hfeng-pmm1	INDEL	I1_5	map_l100_m1_e0	het	98.3748	97.2973	99.4764	82.8507	756	21	760	4	0	0.0000
egarrison-hhga	SNP	tv	map_l250_m0_e0	homalt	98.9583	98.4456	99.4764	92.2735	190	3	190	1	1	100.0000
dgrover-gatk	INDEL	D16_PLUS	lowcmp_SimpleRepeat_quadTR_11to50	het	99.3640	99.2519	99.4764	81.8355	398	3	380	2	1	50.0000
ltrigg-rtg1	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.3191	99.1623	99.4764	77.1586	947	8	950	5	1	20.0000
ndellapenna-hhga	INDEL	D16_PLUS	HG002compoundhet	hetalt	63.9739	47.1473	99.4764	32.8056	909	1019	760	4	3	75.0000
ndellapenna-hhga	SNP	tv	map_l250_m0_e0	homalt	98.9583	98.4456	99.4764	91.6630	190	3	190	1	1	100.0000
hfeng-pmm1	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	*	95.0000	90.9091	99.4764	75.1625	190	19	190	1	1	100.0000
gduggal-bwavard	SNP	ti	map_l250_m2_e1	homalt	98.3428	97.2348	99.4764	88.0642	1723	49	1710	9	6	66.6667
ckim-gatk	INDEL	D16_PLUS	lowcmp_SimpleRepeat_quadTR_11to50	het	99.4888	99.5012	99.4764	82.1911	399	2	380	2	1	50.0000
rpoplin-dv42	INDEL	I1_5	*	*	99.2493	99.0230	99.4767	57.6844	149192	1472	149236	785	730	92.9936
raldana-dualsentieon	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331	*	97.6338	95.8574	99.4771	65.4659	15411	666	15411	81	71	87.6543
raldana-dualsentieon	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	*	97.6338	95.8574	99.4771	65.4659	15411	666	15411	81	71	87.6543
ckim-dragen	INDEL	I1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	98.6173	97.7724	99.4771	72.6068	15230	347	15218	80	60	75.0000
bgallagher-sentieon	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	hetalt	92.6115	86.6324	99.4771	37.4276	2359	364	2473	13	12	92.3077
jlack-gatk	INDEL	D16_PLUS	lowcmp_AllRepeats_lt51bp_gt95identity_merged	hetalt	96.7688	94.2040	99.4772	35.3452	1219	75	1332	7	7	100.0000
cchapple-custom	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	97.8248	96.2264	99.4772	49.0761	714	28	3235	17	15	88.2353
gduggal-bwaplat	INDEL	I1_5	HG002complexvar	homalt	95.0189	90.9429	99.4774	52.2999	12230	1218	12183	64	50	78.1250
cchapple-custom	SNP	ti	lowcmp_AllRepeats_51to200bp_gt95identity_merged	*	99.3846	99.2919	99.4776	66.9410	3225	23	3237	17	3	17.6471
gduggal-snapvard	SNP	*	map_l250_m1_e0	homalt	96.4845	93.6663	99.4776	87.2382	2307	156	2285	12	9	75.0000
dgrover-gatk	INDEL	D6_15	*	hetalt	97.1534	94.9352	99.4777	33.7944	7760	414	7809	41	39	95.1220
ltrigg-rtg1	INDEL	D6_15	lowcmp_SimpleRepeat_quadTR_11to50	hetalt	98.1564	96.8697	99.4778	38.9804	1145	37	1143	6	6	100.0000
ltrigg-rtg2	INDEL	*	map_l125_m2_e1	homalt	98.8303	98.1912	99.4778	81.6483	760	14	762	4	1	25.0000
ckim-dragen	SNP	ti	lowcmp_AllRepeats_51to200bp_gt95identity_merged	*	98.7329	97.9988	99.4780	65.5490	3183	65	3240	17	5	29.4118
bgallagher-sentieon	INDEL	I1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	98.6669	97.8687	99.4782	72.3688	15245	332	15252	80	64	80.0000
cchapple-custom	SNP	tv	lowcmp_SimpleRepeat_triTR_11to50	*	99.5073	99.5362	99.4784	36.9220	3434	16	3433	18	5	27.7778
jli-custom	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331	het	99.1054	98.7352	99.4784	63.8767	13583	174	13541	71	56	78.8732
jli-custom	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het	99.1054	98.7352	99.4784	63.8767	13583	174	13541	71	56	78.8732

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