PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1296 1297 1298 1299 1300 1301 1302 1303 1304 ... 1720 1721 » 64951-65000 / 86044 show all
rpoplin-dv42	INDEL	D6_15	lowcmp_SimpleRepeat_triTR_11to50	*	99.2764	99.1329	99.4203	34.7086	1715	15	1715	10	10	100.0000
raldana-dualsentieon	INDEL	D1_5	map_l125_m1_e0	homalt	98.8473	98.2808	99.4203	83.7952	343	6	343	2	2	100.0000
raldana-dualsentieon	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	99.7093	100.0000	99.4203	57.3020	343	0	343	2	1	50.0000
mlin-fermikit	INDEL	D1_5	lowcmp_SimpleRepeat_triTR_11to50	hetalt	85.0062	74.2424	99.4203	29.8780	343	119	343	2	2	100.0000
ckim-dragen	INDEL	I1_5	map_siren	homalt	99.2562	99.0924	99.4205	77.9401	1201	11	1201	7	5	71.4286
ltrigg-rtg2	INDEL	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	99.0742	98.7301	99.4207	71.8442	47658	613	47540	277	83	29.9639
gduggal-bwaplat	INDEL	D16_PLUS	lowcmp_AllRepeats_51to200bp_gt95identity_merged	hetalt	68.9886	52.8205	99.4208	56.5071	515	460	515	3	3	100.0000
dgrover-gatk	SNP	ti	map_l125_m2_e0	*	99.3734	99.3258	99.4210	73.9134	30054	204	30050	175	42	24.0000
ckim-vqsr	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	99.7101	100.0000	99.4220	81.3578	172	0	172	1	1	100.0000
ltrigg-rtg1	INDEL	I1_5	HG002complexvar	hetalt	97.3210	95.3071	99.4220	76.8604	1645	81	1892	11	11	100.0000
ckim-dragen	INDEL	D1_5	lowcmp_SimpleRepeat_diTR_51to200	hetalt	78.8827	65.3768	99.4220	27.6151	321	170	344	2	2	100.0000
ckim-gatk	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	99.7101	100.0000	99.4220	81.3578	172	0	172	1	1	100.0000
cchapple-custom	INDEL	I1_5	map_l100_m2_e0	homalt	98.7651	98.1168	99.4220	80.4520	521	10	516	3	2	66.6667
hfeng-pmm2	INDEL	D1_5	segdup	het	99.3497	99.2775	99.4220	94.7071	687	5	688	4	0	0.0000
jlack-gatk	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	98.2857	97.1751	99.4220	74.4838	172	5	172	1	1	100.0000
jlack-gatk	INDEL	I6_15	lowcmp_SimpleRepeat_quadTR_51to200	*	95.8217	92.4731	99.4220	70.1209	172	14	172	1	1	100.0000
bgallagher-sentieon	INDEL	I6_15	segdup	*	98.8506	98.2857	99.4220	92.6819	172	3	172	1	0	0.0000
asubramanian-gatk	INDEL	D1_5	map_l125_m2_e1	homalt	95.8217	92.4731	99.4220	87.0023	344	28	344	2	1	50.0000
asubramanian-gatk	INDEL	D1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	98.9428	98.4681	99.4221	74.5651	63444	987	63485	369	305	82.6558
gduggal-bwavard	SNP	*	map_l250_m2_e0	homalt	98.2454	97.0961	99.4222	88.0153	2608	78	2581	15	10	66.6667
jlack-gatk	INDEL	D6_15	lowcmp_AllRepeats_lt51bp_gt95identity_merged	hetalt	96.2201	93.2179	99.4222	33.5409	6350	462	6367	37	31	83.7838
gduggal-bwaplat	SNP	*	map_l150_m2_e1	*	69.5020	53.4244	99.4224	91.0196	17208	15002	17212	100	30	30.0000
hfeng-pmm3	SNP	ti	map_l150_m2_e1	het	99.3308	99.2393	99.4225	76.8259	12916	99	12912	75	8	10.6667
jlack-gatk	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.5374	99.6524	99.4226	63.8866	860	3	861	5	2	40.0000
jli-custom	SNP	tv	HG002compoundhet	het	99.4759	99.5292	99.4226	55.0428	4651	22	4649	27	10	37.0370
jmaeng-gatk	SNP	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	99.5601	99.6979	99.4226	63.8015	35312	107	35301	205	16	7.8049
ckim-dragen	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.5374	99.6524	99.4226	64.3621	860	3	861	5	3	60.0000
qzeng-custom	SNP	*	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	99.3109	99.1991	99.4230	66.8389	1734	14	1723	10	7	70.0000
ltrigg-rtg1	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	het	98.8308	98.2456	99.4230	59.7380	4368	78	4308	25	16	64.0000
eyeh-varpipe	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	99.4629	99.5028	99.4231	53.9823	1601	8	1551	9	3	33.3333
hfeng-pmm2	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331	het	98.4720	97.5389	99.4231	74.9870	6262	158	6204	36	21	58.3333
hfeng-pmm2	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het	98.4720	97.5389	99.4231	74.9870	6262	158	6204	36	21	58.3333
jli-custom	INDEL	I1_5	map_l125_m2_e1	*	99.1939	98.9655	99.4233	85.7143	861	9	862	5	2	40.0000
dgrover-gatk	SNP	ti	map_l125_m1_e0	*	99.3758	99.3284	99.4233	72.4326	29138	197	29134	169	41	24.2604
dgrover-gatk	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	hetalt	93.9195	88.9930	99.4234	30.1878	1520	188	1552	9	8	88.8889
gduggal-bwaplat	INDEL	*	map_siren	homalt	83.1471	71.4501	99.4235	85.0984	1897	758	1897	11	10	90.9091
rpoplin-dv42	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	hetalt	97.1701	95.0166	99.4235	24.0070	5167	271	5174	30	29	96.6667
jlack-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	hetalt	87.6621	78.3888	99.4236	31.5582	1012	279	1035	6	5	83.3333
ckim-isaac	INDEL	*	*	homalt	96.2069	93.1918	99.4236	48.6128	116650	8522	116601	676	381	56.3609
bgallagher-sentieon	INDEL	D1_5	segdup	het	99.4950	99.5665	99.4236	94.8997	689	3	690	4	0	0.0000
gduggal-bwafb	INDEL	D1_5	map_l125_m1_e0	homalt	99.1379	98.8539	99.4236	87.3818	345	4	345	2	2	100.0000
dgrover-gatk	INDEL	D1_5	map_l125_m1_e0	homalt	99.1379	98.8539	99.4236	85.6730	345	4	345	2	2	100.0000
dgrover-gatk	SNP	ti	map_l125_m2_e1	*	99.3781	99.3327	99.4236	73.9461	30365	204	30361	176	42	23.8636
hfeng-pmm1	INDEL	D1_5	map_l100_m2_e1	*	98.5438	97.6792	99.4238	81.5751	1894	45	1898	11	1	9.0909
gduggal-bwavard	SNP	ti	map_l250_m1_e0	homalt	98.2992	97.1998	99.4238	87.2438	1562	45	1553	9	6	66.6667
gduggal-bwaplat	SNP	tv	map_l125_m2_e1	*	74.1036	59.0623	99.4240	88.9166	9838	6819	9838	57	13	22.8070
cchapple-custom	INDEL	I6_15	lowcmp_SimpleRepeat_diTR_11to50	het	98.5778	97.7459	99.4240	60.7000	477	11	2244	13	9	69.2308
hfeng-pmm3	SNP	*	segdup	het	99.5790	99.7344	99.4241	89.8527	17271	46	17265	100	0	0.0000
ckim-isaac	INDEL	D1_5	lowcmp_SimpleRepeat_homopolymer_6to10	het	98.9925	98.5647	99.4241	53.5139	14558	212	14501	84	48	57.1429
mlin-fermikit	SNP	ti	lowcmp_SimpleRepeat_quadTR_11to50	het	98.3589	97.3161	99.4242	37.2504	6563	181	6562	38	5	13.1579

PrecisionFDA Truth Challenge

PrecisionFDA
Truth Challenge