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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1294 1295 1296 1297 1298 1299 1300 1301 1302 ... 1720 1721 » 64851-64900 / 86044 show all
egarrison-hhga	SNP	ti	HG002compoundhet	*	99.0004	98.5925	99.4116	34.5800	17232	246	17233	102	75	73.5294
gduggal-snapplat	SNP	ti	map_l250_m0_e0	homalt	87.2580	77.7523	99.4118	93.2647	339	97	338	2	2	100.0000
asubramanian-gatk	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	96.8316	94.3820	99.4118	82.3468	168	10	169	1	0	0.0000
asubramanian-gatk	INDEL	I16_PLUS	lowcmp_SimpleRepeat_quadTR_11to50	het	96.6553	94.0476	99.4118	79.9292	158	10	169	1	1	100.0000
hfeng-pmm2	INDEL	I6_15	lowcmp_SimpleRepeat_quadTR_51to200	*	94.9438	90.8602	99.4118	70.1230	169	17	169	1	1	100.0000
hfeng-pmm1	INDEL	I6_15	lowcmp_SimpleRepeat_quadTR_51to200	*	94.9438	90.8602	99.4118	70.1230	169	17	169	1	1	100.0000
jlack-gatk	INDEL	D6_15	*	hetalt	94.6900	90.3964	99.4119	33.6937	7389	785	7438	44	37	84.0909
ckim-dragen	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	99.1773	98.9437	99.4120	58.5572	7306	78	7270	43	39	90.6977
rpoplin-dv42	INDEL	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	hetalt	96.6681	94.0715	99.4120	57.9684	14503	914	14541	86	84	97.6744
asubramanian-gatk	INDEL	*	lowcmp_SimpleRepeat_quadTR_11to50	hetalt	98.2955	97.2036	99.4122	43.2207	2607	75	2706	16	10	62.5000
hfeng-pmm1	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_51to200	*	97.7720	96.1851	99.4123	57.0191	1185	47	1184	7	6	85.7143
ltrigg-rtg2	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	*	98.1878	96.9931	99.4123	51.7989	3387	105	3383	20	14	70.0000
dgrover-gatk	SNP	ti	lowcmp_AllRepeats_51to200bp_gt95identity_merged	*	99.1978	98.9840	99.4125	65.8284	3215	33	3215	19	7	36.8421
ltrigg-rtg1	INDEL	I6_15	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	97.7403	96.1234	99.4126	61.0480	5108	206	5077	30	17	56.6667
ndellapenna-hhga	SNP	tv	map_l150_m0_e0	*	98.3535	97.3167	99.4126	77.2836	4062	112	4062	24	11	45.8333
cchapple-custom	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	99.6468	99.8821	99.4127	54.4823	2541	3	2539	15	1	6.6667
ltrigg-rtg2	INDEL	D1_5	lowcmp_SimpleRepeat_diTR_11to50	hetalt	98.2925	97.1972	99.4127	32.2154	6693	193	6771	40	40	100.0000
ckim-vqsr	INDEL	D6_15	lowcmp_SimpleRepeat_diTR_11to50	hetalt	97.4580	95.5784	99.4130	24.4663	4561	211	4573	27	27	100.0000
ckim-gatk	INDEL	D6_15	lowcmp_SimpleRepeat_diTR_11to50	hetalt	97.4690	95.5993	99.4132	24.4623	4562	210	4574	27	27	100.0000
ckim-dragen	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	het	98.9932	98.5767	99.4132	76.4066	2424	35	2372	14	10	71.4286
asubramanian-gatk	INDEL	I1_5	*	hetalt	96.2314	93.2470	99.4133	63.4018	10439	756	10505	62	58	93.5484
ckim-gatk	INDEL	I16_PLUS	HG002complexvar	hetalt	96.6468	94.0299	99.4135	66.8932	315	20	339	2	2	100.0000
raldana-dualsentieon	INDEL	I1_5	map_l125_m2_e1	homalt	99.1228	98.8338	99.4135	83.7309	339	4	339	2	1	50.0000
rpoplin-dv42	INDEL	I1_5	map_l125_m2_e0	homalt	99.4135	99.4135	99.4135	84.6119	339	2	339	2	1	50.0000
ckim-vqsr	INDEL	I16_PLUS	HG002complexvar	hetalt	96.6468	94.0299	99.4135	66.8932	315	20	339	2	2	100.0000
gduggal-bwavard	SNP	*	func_cds	het	99.2091	99.0055	99.4135	34.5015	11050	111	11018	65	23	35.3846
gduggal-bwavard	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	93.9379	89.0339	99.4135	76.1872	341	42	339	2	2	100.0000
ckim-dragen	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331	het	99.2085	99.0041	99.4137	68.4982	13620	137	13565	80	52	65.0000
ckim-dragen	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het	99.2085	99.0041	99.4137	68.4982	13620	137	13565	80	52	65.0000
bgallagher-sentieon	SNP	tv	map_l250_m1_e0	homalt	99.2393	99.0654	99.4138	85.1935	848	8	848	5	4	80.0000
jlack-gatk	INDEL	*	lowcmp_AllRepeats_51to200bp_gt95identity_merged	hetalt	89.0056	80.5701	99.4139	40.3057	3081	743	3223	19	17	89.4737
jmaeng-gatk	INDEL	D1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.6721	99.9315	99.4140	76.0962	21884	15	21884	129	128	99.2248
dgrover-gatk	SNP	tv	map_siren	het	99.5269	99.6400	99.4140	62.9092	28506	103	28501	168	26	15.4762
rpoplin-dv42	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	hetalt	95.9410	92.7025	99.4141	25.1041	6593	519	6617	39	38	97.4359
ltrigg-rtg2	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	98.3655	97.3387	99.4143	58.7428	14228	389	14257	84	51	60.7143
jli-custom	INDEL	I1_5	map_l125_m2_e0	*	99.1816	98.9498	99.4145	85.5524	848	9	849	5	2	40.0000
bgallagher-sentieon	INDEL	D6_15	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.6479	99.8824	99.4145	51.1721	849	1	849	5	5	100.0000
eyeh-varpipe	INDEL	I1_5	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	97.2328	95.1446	99.4146	48.4901	921	47	11209	66	66	100.0000
jli-custom	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	hetalt	94.2361	89.5703	99.4147	34.3662	2439	284	2548	15	14	93.3333
ltrigg-rtg2	INDEL	D6_15	lowcmp_AllRepeats_lt51bp_gt95identity_merged	hetalt	98.3080	97.2255	99.4149	40.8780	6623	189	6627	39	39	100.0000
rpoplin-dv42	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331	hetalt	95.5845	92.0383	99.4149	38.4055	15375	1330	15461	91	90	98.9011
rpoplin-dv42	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	hetalt	95.5845	92.0383	99.4149	38.4055	15375	1330	15461	91	90	98.9011
rpoplin-dv42	INDEL	I6_15	segdup	*	98.2659	97.1429	99.4152	91.3984	170	5	170	1	1	100.0000
ckim-vqsr	INDEL	I1_5	map_l125_m2_e0	homalt	99.5608	99.7067	99.4152	85.0850	340	1	340	2	1	50.0000
ckim-isaac	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	93.3541	87.9896	99.4152	75.0910	337	46	340	2	2	100.0000
hfeng-pmm1	INDEL	I6_15	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	97.6540	95.9541	99.4153	63.0411	5099	215	5101	30	22	73.3333
jlack-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.3837	99.3515	99.4160	78.0297	1532	10	1532	9	5	55.5556
asubramanian-gatk	INDEL	I1_5	lowcmp_SimpleRepeat_diTR_11to50	hetalt	96.5808	93.9028	99.4161	29.0155	3573	232	4086	24	23	95.8333
ltrigg-rtg2	SNP	tv	segdup	homalt	99.6765	99.9382	99.4161	89.5171	3236	2	3235	19	19	100.0000
rpoplin-dv42	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	hetalt	95.4203	91.7332	99.4161	31.9693	12872	1160	12941	76	75	98.6842

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