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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1291 1292 1293 1294 1295 1296 1297 1298 1299 ... 1720 1721 » 64701-64750 / 86044 show all
cchapple-custom	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.2009	99.0050	99.3976	60.0802	995	10	990	6	5	83.3333
jlack-gatk	SNP	ti	lowcmp_SimpleRepeat_diTR_11to50	het	99.4922	99.5870	99.3976	71.7079	3135	13	3135	19	9	47.3684
gduggal-bwaplat	INDEL	D16_PLUS	lowcmp_SimpleRepeat_quadTR_11to50	homalt	83.3333	71.7391	99.3976	70.7746	165	65	165	1	1	100.0000
ltrigg-rtg1	INDEL	*	lowcmp_SimpleRepeat_diTR_11to50	het	97.8607	96.3706	99.3977	55.2797	15188	572	15184	92	32	34.7826
ckim-vqsr	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331	het	99.0199	98.6449	99.3978	76.9388	6333	87	6272	38	24	63.1579
ckim-vqsr	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het	99.0199	98.6449	99.3978	76.9388	6333	87	6272	38	24	63.1579
egarrison-hhga	SNP	tv	HG002compoundhet	*	98.7023	98.0164	99.3979	47.2112	8746	177	8749	53	39	73.5849
rpoplin-dv42	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331	het	99.4197	99.4416	99.3979	75.9193	9082	51	9080	55	15	27.2727
rpoplin-dv42	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het	99.4197	99.4416	99.3979	75.9193	9082	51	9080	55	15	27.2727
bgallagher-sentieon	SNP	ti	map_l100_m1_e0	*	99.4715	99.5452	99.3979	64.6493	47713	218	47706	289	50	17.3010
ckim-gatk	INDEL	*	map_siren	homalt	99.3412	99.2844	99.3980	81.7081	2636	19	2642	16	9	56.2500
gduggal-bwaplat	SNP	ti	map_l125_m2_e1	*	76.0359	61.5656	99.3981	86.9873	18820	11749	18827	114	34	29.8246
gduggal-bwaplat	SNP	ti	map_l100_m2_e0	*	83.6206	72.1656	99.3982	81.0322	35333	13628	35344	214	67	31.3084
ckim-dragen	INDEL	D16_PLUS	lowcmp_SimpleRepeat_diTR_11to50	hetalt	97.2959	95.2806	99.3983	32.5487	747	37	826	5	5	100.0000
hfeng-pmm3	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	97.9644	96.5713	99.3983	49.3594	6450	229	6443	39	35	89.7436
ckim-dragen	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	99.3320	99.2657	99.3984	79.0065	1487	11	1487	9	2	22.2222
anovak-vg	SNP	ti	map_l100_m2_e1	homalt	92.0569	85.7251	99.3985	60.4006	15854	2640	15700	95	90	94.7368
rpoplin-dv42	INDEL	D16_PLUS	lowcmp_AllRepeats_lt51bp_gt95identity_merged	hetalt	92.3110	86.1669	99.3986	32.5999	1115	179	1157	7	7	100.0000
dgrover-gatk	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331	het	99.0909	98.7850	99.3987	76.0252	6342	78	6282	38	24	63.1579
dgrover-gatk	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het	99.0909	98.7850	99.3987	76.0252	6342	78	6282	38	24	63.1579
hfeng-pmm1	INDEL	*	map_siren	homalt	99.4357	99.4727	99.3987	79.2482	2641	14	2645	16	9	56.2500
anovak-vg	SNP	ti	map_l100_m1_e0	homalt	91.9372	85.5178	99.3987	57.5594	15359	2601	15207	92	87	94.5652
ckim-gatk	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331	*	98.0263	96.6909	99.3990	68.1693	15545	532	15546	94	71	75.5319
ckim-gatk	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	*	98.0263	96.6909	99.3990	68.1693	15545	532	15546	94	71	75.5319
cchapple-custom	SNP	ti	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	99.4978	99.5967	99.3992	57.0007	17779	72	17867	108	27	25.0000
rpoplin-dv42	SNP	*	map_l100_m2_e0	het	99.2759	99.1530	99.3992	65.9847	46006	393	45994	278	141	50.7194
rpoplin-dv42	SNP	*	map_l100_m2_e1	het	99.2783	99.1577	99.3992	66.0072	46503	395	46491	281	142	50.5338
rpoplin-dv42	INDEL	*	lowcmp_SimpleRepeat_triTR_11to50	het	99.4263	99.4533	99.3994	51.5732	3638	20	3641	22	17	77.2727
cchapple-custom	INDEL	I1_5	map_l125_m2_e1	homalt	98.6740	97.9592	99.3994	83.4739	336	7	331	2	1	50.0000
astatham-gatk	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	hetalt	95.6009	92.0821	99.3994	59.3902	314	27	331	2	2	100.0000
hfeng-pmm1	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	hetalt	95.9161	92.6686	99.3994	59.8795	316	25	331	2	2	100.0000
hfeng-pmm3	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	hetalt	95.9161	92.6686	99.3994	59.6852	316	25	331	2	2	100.0000
mlin-fermikit	INDEL	I1_5	*	hetalt	79.4455	66.1635	99.3997	62.4768	7407	3788	7451	45	45	100.0000
jlack-gatk	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	*	99.2881	99.1766	99.3998	50.9385	1325	11	1325	8	0	0.0000
gduggal-bwavard	SNP	tv	HG002complexvar	*	98.2474	97.1213	99.3998	22.3354	239069	7086	234343	1415	923	65.2297
jpowers-varprowl	SNP	tv	map_l100_m1_e0	homalt	99.1519	98.9052	99.3999	66.3513	8944	99	8944	54	39	72.2222
cchapple-custom	INDEL	D1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.5991	99.7991	99.4000	72.8360	21855	44	21701	131	126	96.1832
anovak-vg	SNP	ti	map_l125_m1_e0	homalt	89.7681	81.8379	99.4000	64.4522	9039	2006	8946	54	49	90.7407
asubramanian-gatk	INDEL	D6_15	lowcmp_SimpleRepeat_quadTR_11to50	hetalt	98.6797	97.9695	99.4002	28.6675	1158	24	1160	7	6	85.7143
ltrigg-rtg1	INDEL	I6_15	HG002complexvar	*	97.6888	96.0351	99.4005	50.9611	4602	190	4311	26	17	65.3846
dgrover-gatk	INDEL	I6_15	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	99.0176	98.6372	99.4008	77.5553	1520	21	1493	9	3	33.3333
jli-custom	INDEL	I6_15	HG002complexvar	*	98.1083	96.8489	99.4008	55.2909	4641	151	4645	28	23	82.1429
raldana-dualsentieon	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	*	95.0639	91.0895	99.4009	86.9340	2157	211	2157	13	10	76.9231
gduggal-bwaplat	SNP	*	map_l100_m0_e0	*	72.1141	56.5817	99.4011	87.0646	18582	14259	18588	112	36	32.1429
eyeh-varpipe	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	99.5100	99.6190	99.4012	66.6667	523	2	498	3	0	0.0000
gduggal-bwafb	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	hetalt	87.9792	78.9116	99.4012	47.6489	1276	341	166	1	1	100.0000
jli-custom	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	hetalt	95.9169	92.6686	99.4012	55.4667	316	25	332	2	2	100.0000
dgrover-gatk	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	hetalt	95.7596	92.3754	99.4012	59.5152	315	26	332	2	2	100.0000
ltrigg-rtg2	INDEL	I1_5	lowcmp_SimpleRepeat_quadTR_11to50	hetalt	99.0806	98.7622	99.4012	57.1167	1117	14	1162	7	7	100.0000
ltrigg-rtg2	INDEL	I6_15	segdup	*	98.5505	97.7143	99.4012	90.2624	171	4	166	1	1	100.0000

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