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Explore HG002 comparison results

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Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1285 1286 1287 1288 1289 1290 1291 1292 1293 ... 1720 1721 » 64401-64450 / 86044 show all
hfeng-pmm2	SNP	ti	map_l125_m2_e0	*	99.4203	99.4745	99.3661	73.2412	30099	159	30095	192	23	11.9792
ltrigg-rtg2	INDEL	D6_15	*	hetalt	97.5461	95.7915	99.3661	40.2288	7830	344	7838	50	50	100.0000
hfeng-pmm2	INDEL	D6_15	HG002complexvar	*	96.9573	94.6624	99.3663	56.8597	5019	283	5018	32	26	81.2500
ndellapenna-hhga	SNP	*	map_l250_m1_e0	het	97.4601	95.6257	99.3663	87.5048	4547	208	4547	29	14	48.2759
gduggal-bwaplat	INDEL	D1_5	lowcmp_SimpleRepeat_triTR_11to50	homalt	82.6526	70.7519	99.3664	48.9213	941	389	941	6	4	66.6667
ghariani-varprowl	SNP	tv	map_l100_m1_e0	homalt	99.1131	98.8610	99.3665	64.2948	8940	103	8940	57	38	66.6667
egarrison-hhga	SNP	*	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	99.0531	98.7414	99.3667	63.7370	1726	22	1726	11	10	90.9091
ndellapenna-hhga	SNP	*	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	99.0531	98.7414	99.3667	63.5237	1726	22	1726	11	10	90.9091
dgrover-gatk	SNP	ti	map_l100_m2_e0	het	99.4042	99.4416	99.3668	70.9135	30451	171	30444	194	39	20.1031
bgallagher-sentieon	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331	het	99.0359	98.7072	99.3669	75.4765	6337	83	6278	40	26	65.0000
bgallagher-sentieon	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het	99.0359	98.7072	99.3669	75.4765	6337	83	6278	40	26	65.0000
rpoplin-dv42	SNP	ti	map_l125_m2_e0	het	99.1665	98.9669	99.3669	71.7774	18681	195	18677	119	74	62.1849
hfeng-pmm3	SNP	*	map_l150_m1_e0	het	99.2744	99.1820	99.3670	75.4908	19158	158	19152	122	13	10.6557
mlin-fermikit	INDEL	*	lowcmp_SimpleRepeat_homopolymer_6to10	hetalt	92.9377	87.2897	99.3671	71.9361	467	68	471	3	3	100.0000
raldana-dualsentieon	INDEL	I1_5	segdup	homalt	99.4720	99.5772	99.3671	92.4798	471	2	471	3	3	100.0000
ltrigg-rtg2	INDEL	I1_5	segdup	homalt	99.6825	100.0000	99.3671	91.5023	473	0	471	3	3	100.0000
jmaeng-gatk	INDEL	I1_5	segdup	homalt	99.4720	99.5772	99.3671	92.8539	471	2	471	3	3	100.0000
ltrigg-rtg1	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	hetalt	93.0144	87.4251	99.3671	72.7116	146	21	157	1	1	100.0000
ltrigg-rtg1	INDEL	I1_5	segdup	homalt	99.6825	100.0000	99.3671	92.1924	473	0	471	3	3	100.0000
ltrigg-rtg2	INDEL	I1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	98.9726	98.5812	99.3672	71.8268	15356	221	15545	99	39	39.3939
asubramanian-gatk	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	*	99.0423	98.7194	99.3672	50.0468	4240	55	4240	27	2	7.4074
hfeng-pmm2	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331	het	98.6105	97.8651	99.3674	66.4258	19161	418	19162	122	0	0.0000
hfeng-pmm2	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het	98.6105	97.8651	99.3674	66.4258	19161	418	19162	122	0	0.0000
ckim-dragen	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331	het	98.5612	97.7676	99.3678	76.3607	1927	44	1886	12	6	50.0000
ckim-dragen	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het	98.5612	97.7676	99.3678	76.3607	1927	44	1886	12	6	50.0000
ltrigg-rtg2	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.3113	99.2548	99.3680	72.5172	3596	27	3616	23	5	21.7391
ltrigg-rtg2	INDEL	I6_15	*	het	98.7987	98.2358	99.3681	45.8366	9856	177	9592	61	15	24.5902
ltrigg-rtg1	INDEL	D16_PLUS	HG002compoundhet	hetalt	94.9583	90.9232	99.3682	22.2073	1753	175	1730	11	11	100.0000
ghariani-varprowl	SNP	tv	map_l125_m2_e1	homalt	98.8833	98.4030	99.3682	71.6795	5977	97	5977	38	24	63.1579
jli-custom	INDEL	*	lowcmp_SimpleRepeat_homopolymer_6to10	hetalt	93.0441	87.4766	99.3684	70.7692	468	67	472	3	3	100.0000
rpoplin-dv42	INDEL	I1_5	lowcmp_SimpleRepeat_triTR_11to50	het	99.4713	99.5745	99.3684	67.9054	468	2	472	3	3	100.0000
ltrigg-rtg2	INDEL	I6_15	lowcmp_SimpleRepeat_diTR_11to50	*	98.3471	97.3466	99.3684	59.4294	2348	64	2360	15	9	60.0000
ltrigg-rtg2	INDEL	I16_PLUS	*	hetalt	90.2131	82.6025	99.3685	50.0717	1733	365	1731	11	11	100.0000
hfeng-pmm3	SNP	*	map_l250_m2_e0	homalt	99.4794	99.5905	99.3685	87.8350	2675	11	2675	17	6	35.2941
hfeng-pmm1	SNP	*	map_l250_m2_e0	homalt	99.4794	99.5905	99.3685	87.8799	2675	11	2675	17	6	35.2941
hfeng-pmm2	SNP	*	map_l250_m2_e0	homalt	99.4980	99.6277	99.3687	87.8966	2676	10	2676	17	6	35.2941
hfeng-pmm2	SNP	tv	map_l100_m1_e0	*	99.4801	99.5919	99.3687	67.2876	24401	100	24397	155	17	10.9677
jli-custom	INDEL	D1_5	lowcmp_SimpleRepeat_diTR_11to50	homalt	99.6216	99.8758	99.3687	35.8426	7238	9	7241	46	44	95.6522
bgallagher-sentieon	INDEL	I1_5	map_siren	*	99.3016	99.2346	99.3688	80.4976	2982	23	2991	19	5	26.3158
ltrigg-rtg2	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331	hetalt	97.5228	95.7439	99.3691	35.4149	7716	343	7718	49	49	100.0000
ltrigg-rtg2	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	hetalt	97.5228	95.7439	99.3691	35.4149	7716	343	7718	49	49	100.0000
jmaeng-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_51to200	hetalt	97.4161	95.5385	99.3691	21.9212	621	29	630	4	4	100.0000
jpowers-varprowl	INDEL	I1_5	map_l125_m1_e0	homalt	97.8261	96.3303	99.3691	77.2434	315	12	315	2	2	100.0000
rpoplin-dv42	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	*	99.5262	99.6838	99.3691	86.9359	1261	4	1260	8	6	75.0000
raldana-dualsentieon	SNP	tv	segdup	*	99.5671	99.7656	99.3693	91.0002	8512	20	8508	54	6	11.1111
hfeng-pmm2	SNP	ti	map_l125_m2_e1	*	99.4245	99.4799	99.3693	73.2743	30410	159	30406	193	23	11.9171
ckim-vqsr	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	99.3069	99.2443	99.3695	89.2982	788	6	788	5	5	100.0000
gduggal-bwaplat	INDEL	*	map_l150_m2_e0	*	71.6038	55.9659	99.3695	96.1005	788	620	788	5	1	20.0000
hfeng-pmm3	INDEL	D6_15	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.5197	99.6701	99.3697	56.7552	3626	12	3626	23	21	91.3043
rpoplin-dv42	INDEL	I1_5	map_l125_m1_e0	het	98.1263	96.9136	99.3697	85.6928	471	15	473	3	2	66.6667

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