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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1276 1277 1278 1279 1280 1281 1282 1283 1284 ... 1720 1721 » 63951-64000 / 86044 show all
qzeng-custom	INDEL	D1_5	lowcmp_SimpleRepeat_triTR_11to50	*	99.0561	98.7981	99.3154	40.3094	4028	49	4062	28	17	60.7143
ckim-vqsr	INDEL	I6_15	*	het	99.0039	98.6943	99.3155	60.3259	9902	131	9866	68	49	72.0588
ckim-vqsr	INDEL	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	98.9460	98.5791	99.3156	73.7970	93107	1342	93014	641	576	89.8596
ckim-vqsr	INDEL	*	map_l125_m1_e0	homalt	99.2481	99.1803	99.3160	86.5054	726	6	726	5	3	60.0000
ckim-isaac	SNP	*	lowcmp_SimpleRepeat_triTR_11to50	*	96.8519	94.5071	99.3160	27.2218	6951	404	6970	48	31	64.5833
bgallagher-sentieon	SNP	ti	map_siren	het	99.4766	99.6377	99.3160	56.6817	62156	226	62147	428	50	11.6822
bgallagher-sentieon	INDEL	D16_PLUS	*	hetalt	96.4203	93.6886	99.3161	38.7676	1811	122	2033	14	14	100.0000
egarrison-hhga	INDEL	D1_5	map_siren	homalt	99.4012	99.4863	99.3162	80.2231	1162	6	1162	8	7	87.5000
dgrover-gatk	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	99.2077	99.0991	99.3166	75.7056	440	4	436	3	0	0.0000
astatham-gatk	SNP	ti	map_l250_m2_e0	*	92.8085	87.1006	99.3169	90.7841	4362	646	4362	30	12	40.0000
gduggal-bwaplat	INDEL	D1_5	lowcmp_SimpleRepeat_triTR_11to50	*	83.0598	71.3760	99.3174	53.6319	2910	1167	2910	20	10	50.0000
jli-custom	SNP	tv	map_l100_m1_e0	het	99.2078	99.0984	99.3174	64.0498	15278	139	15277	105	24	22.8571
ltrigg-rtg2	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.5424	99.7679	99.3178	59.4259	3869	9	3931	27	1	3.7037
hfeng-pmm1	INDEL	D6_15	*	*	98.1898	97.0872	99.3178	50.8773	25332	760	25331	174	155	89.0805
ltrigg-rtg1	INDEL	D1_5	map_l125_m2_e1	het	96.6680	94.1558	99.3179	76.7302	725	45	728	5	0	0.0000
ltrigg-rtg1	INDEL	D1_5	map_l150_m2_e0	*	97.0527	94.8886	99.3179	83.4836	724	39	728	5	2	40.0000
rpoplin-dv42	INDEL	I1_5	lowcmp_SimpleRepeat_homopolymer_6to10	*	98.9427	98.5704	99.3179	69.3175	2620	38	2621	18	14	77.7778
jpowers-varprowl	SNP	ti	func_cds	het	99.3416	99.3650	99.3183	29.2650	8450	54	8450	58	2	3.4483
gduggal-bwaplat	INDEL	*	lowcmp_SimpleRepeat_quadTR_11to50	hetalt	82.5452	70.6189	99.3183	55.6924	1894	788	1894	13	13	100.0000
ckim-isaac	SNP	ti	map_l250_m2_e1	het	69.1304	53.0161	99.3186	92.2279	1749	1550	1749	12	1	8.3333
jli-custom	INDEL	D1_5	map_siren	*	99.1919	99.0649	99.3191	79.7902	3496	33	3501	24	8	33.3333
jli-custom	SNP	ti	map_l250_m0_e0	*	97.5483	95.8394	99.3192	90.4686	1313	57	1313	9	7	77.7778
ndellapenna-hhga	SNP	ti	map_l250_m0_e0	*	97.5483	95.8394	99.3192	91.9956	1313	57	1313	9	4	44.4444
ndellapenna-hhga	SNP	tv	segdup	het	99.3381	99.3569	99.3193	90.2972	5253	34	5253	36	2	5.5556
ckim-dragen	INDEL	I1_5	*	homalt	99.5565	99.7948	99.3194	55.1956	60304	124	60271	413	409	99.0315
ghariani-varprowl	SNP	tv	map_l100_m2_e1	homalt	99.1004	98.8820	99.3197	66.7481	9198	104	9198	63	40	63.4921
hfeng-pmm1	INDEL	D1_5	map_l125_m0_e0	homalt	98.9831	98.6486	99.3197	85.1215	146	2	146	1	1	100.0000
gduggal-bwaplat	INDEL	*	map_l150_m1_e0	*	70.4293	54.5590	99.3197	95.9257	730	608	730	5	1	20.0000
ckim-vqsr	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331	hetalt	96.7195	94.2517	99.3201	38.1124	1820	111	2045	14	14	100.0000
ckim-vqsr	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	hetalt	96.7195	94.2517	99.3201	38.1124	1820	111	2045	14	14	100.0000
ckim-gatk	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331	hetalt	96.7195	94.2517	99.3201	38.1124	1820	111	2045	14	14	100.0000
ckim-gatk	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	hetalt	96.7195	94.2517	99.3201	38.1124	1820	111	2045	14	14	100.0000
jli-custom	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	99.4796	99.6391	99.3205	59.4883	2485	9	2485	17	0	0.0000
ltrigg-rtg1	INDEL	I6_15	HG002complexvar	het	98.2042	97.1125	99.3207	49.9393	2287	68	2047	14	8	57.1429
ckim-vqsr	INDEL	D16_PLUS	*	hetalt	96.6957	94.2059	99.3207	38.1824	1821	112	2047	14	14	100.0000
ckim-gatk	INDEL	D16_PLUS	*	hetalt	96.6957	94.2059	99.3207	38.1824	1821	112	2047	14	14	100.0000
raldana-dualsentieon	SNP	tv	map_l100_m2_e1	*	99.4052	99.4898	99.3207	66.9624	25154	129	25150	172	5	2.9070
rpoplin-dv42	INDEL	*	map_siren	homalt	99.1894	99.0584	99.3208	79.6138	2630	25	2632	18	11	61.1111
ltrigg-rtg1	INDEL	I1_5	map_l100_m2_e0	*	97.8855	96.4912	99.3208	80.2091	1320	48	1316	9	3	33.3333
hfeng-pmm3	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	*	95.7839	92.4901	99.3209	86.5999	1170	95	1170	8	3	37.5000
jli-custom	INDEL	*	lowcmp_SimpleRepeat_quadTR_51to200	hetalt	96.7064	94.2259	99.3209	30.4194	1126	69	1170	8	7	87.5000
hfeng-pmm2	SNP	ti	segdup	het	99.5229	99.7257	99.3210	90.4269	11997	33	11995	82	0	0.0000
mlin-fermikit	SNP	ti	func_cds	homalt	99.5745	99.8294	99.3210	18.8179	5266	9	5266	36	34	94.4444
astatham-gatk	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331	hetalt	96.8289	94.4588	99.3210	38.8312	1824	107	2048	14	14	100.0000
astatham-gatk	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	hetalt	96.8289	94.4588	99.3210	38.8312	1824	107	2048	14	14	100.0000
ghariani-varprowl	SNP	tv	map_siren	homalt	99.3038	99.2865	99.3211	57.8404	17117	123	17117	117	71	60.6838
bgallagher-sentieon	INDEL	*	*	*	99.2678	99.2143	99.3213	59.6036	341835	2707	341703	2335	1924	82.3983
astatham-gatk	INDEL	D16_PLUS	*	hetalt	96.8051	94.4128	99.3217	38.8807	1825	108	2050	14	14	100.0000
qzeng-custom	SNP	ti	map_l125_m2_e0	homalt	83.3237	71.7644	99.3217	66.9963	8151	3207	8054	55	54	98.1818
dgrover-gatk	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331	hetalt	96.9108	94.6142	99.3217	39.0251	1827	104	2050	14	14	100.0000

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