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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecision Frac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
63651-63700 / 86044 show all
ckim-vqsrINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
95.2891
91.6084
99.2780
52.0761
2622427522
100.0000
ckim-dragenINDELI16_PLUSlowcmp_SimpleRepeat_diTR_11to50hetalt
96.5177
93.9068
99.2780
66.5459
2621727522
100.0000
ckim-gatkINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
95.2891
91.6084
99.2780
52.0761
2622427522
100.0000
hfeng-pmm2INDELD6_15lowcmp_AllRepeats_lt51bp_gt95identity_merged*
98.0378
96.8281
99.2780
56.6258
1553850915539113101
89.3805
qzeng-customINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
98.9050
98.5348
99.2780
72.0061
538855041
25.0000
asubramanian-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
98.8815
98.4877
99.2784
83.9265
2605402614199
47.3684
gduggal-bwaplatINDELD1_5map_siren*
87.3512
77.9824
99.2785
89.5187
27527772752207
35.0000
ltrigg-rtg2INDELD1_5map_l100_m1_e0*
98.1106
96.9697
99.2786
76.3393
1792561789131
7.6923
jlack-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged*
99.3017
99.3248
99.2786
49.2620
4266294266312
6.4516
dgrover-gatkSNPtimap_l150_m1_e0*
99.2284
99.1782
99.2787
76.9359
195501621954614235
24.6479
hfeng-pmm3SNPtvmap_l150_m1_e0het
99.2002
99.1218
99.2788
75.3081
6885616883505
10.0000
gduggal-snapfbSNP*map_l250_m2_e0homalt
95.6387
92.2561
99.2788
92.8119
247820824781810
55.5556
ltrigg-rtg2INDELI1_5map_l125_m2_e0*
98.0491
96.8495
99.2788
82.1574
8302782660
0.0000
jpowers-varprowlSNPtvmap_l250_m1_e0homalt
97.8673
96.4953
99.2788
90.2072
8263082662
33.3333
ltrigg-rtg1INDELI6_15lowcmp_SimpleRepeat_triTR_11to50*
99.1608
99.0431
99.2788
45.5497
414441330
0.0000
qzeng-customSNPtimap_l125_m0_e0homalt
76.3240
61.9906
99.2790
71.5020
2784170727542019
95.0000
ltrigg-rtg1INDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
97.7291
96.2264
99.2795
65.1606
7142868951
20.0000
gduggal-bwavardSNPtvmap_l250_m1_e0homalt
98.1672
97.0794
99.2797
87.2766
8312582764
66.6667
ckim-gatkINDELI6_15lowcmp_AllRepeats_lt51bp_gt95identity_merged*
97.5789
95.9353
99.2797
63.8316
509821651003730
81.0811
cchapple-customINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
97.6175
96.0100
99.2797
41.3870
806133516539120106
88.3333
ltrigg-rtg1INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331*
97.5832
95.9437
99.2798
56.3557
3013412743018821993
42.4658
ltrigg-rtg1INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
97.5832
95.9437
99.2798
56.3557
3013412743018821993
42.4658
jli-customINDEL*map_siren*
98.8895
98.5020
99.2800
80.4395
729911173085317
32.0755
dgrover-gatkSNPtimap_l150_m2_e1*
99.2396
99.1990
99.2803
78.3146
205571662055314936
24.1611
egarrison-hhgaSNPtvlowcmp_SimpleRepeat_diTR_11to50het
98.7140
98.1541
99.2803
63.6850
30315730352210
45.4545
gduggal-bwaplatSNP*map_l150_m0_e0*
57.1530
40.1263
99.2803
94.5754
4828720448283515
42.8571
gduggal-bwavardINDELD1_5map_l125_m0_e0homalt
97.5848
95.9459
99.2806
83.0694
142613811
100.0000
hfeng-pmm2INDELI16_PLUSlowcmp_SimpleRepeat_diTR_11to50het
96.7657
94.3750
99.2806
89.2830
151913810
0.0000
jli-customINDELI16_PLUSlowcmp_SimpleRepeat_diTR_11to50hetalt
96.5190
93.9068
99.2806
63.1788
2621727622
100.0000
jmaeng-gatkINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
95.6672
92.3077
99.2806
52.6405
2642227622
100.0000
ckim-isaacSNP*tech_badpromoters*
93.2432
87.8981
99.2806
31.5271
1381913810
0.0000
ckim-isaacSNPtvmap_l250_m1_e0het
63.1820
46.3346
99.2806
91.7792
82895982861
16.6667
qzeng-customINDELD1_5map_l125_m0_e0homalt
83.6672
72.2973
99.2806
87.5224
1074113811
100.0000
hfeng-pmm3INDELI1_5map_l100_m2_e1*
98.9946
98.7097
99.2811
82.7868
1377181381103
30.0000
ckim-gatkINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
97.2264
95.2551
99.2811
61.5901
801039980105849
84.4828
ckim-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
99.2626
99.2439
99.2814
84.2685
2625202625197
36.8421
jmaeng-gatkINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
96.5651
93.9933
99.2815
52.4049
649441564944742
89.3617
ghariani-varprowlSNPtvmap_l150_m1_e0homalt
98.6612
98.0487
99.2815
73.6565
38697738692815
53.5714
jlack-gatkINDELD6_15lowcmp_SimpleRepeat_diTR_11to50hetalt
95.7361
92.4350
99.2817
26.1684
441136144233226
81.2500
bgallagher-sentieonSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
99.2817
99.2817
99.2817
83.4450
2626192626196
31.5789
hfeng-pmm3SNPtvmap_l150_m2_e0het
99.2203
99.1589
99.2819
76.4022
7191617189525
9.6154
ckim-isaacSNP*map_l250_m2_e0het
67.0153
50.5776
99.2819
92.1809
262725672627192
10.5263
cchapple-customSNPtiHG002compoundhethet
99.0513
98.8217
99.2820
39.9079
9393112102337460
81.0811
gduggal-bwaplatSNPtvmap_l100_m0_e0het
74.3090
59.3741
99.2822
90.5912
4288293442883110
32.2581
dgrover-gatkSNPtimap_l150_m2_e0*
99.2366
99.1907
99.2825
78.2548
203461662034214736
24.4898
dgrover-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
99.5325
99.7837
99.2826
64.9925
138431384100
0.0000
qzeng-customSNPti*hetalt
98.0808
96.9072
99.2832
55.8893
5641855444
100.0000
rpoplin-dv42INDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
91.6249
85.0636
99.2832
28.0928
80314183166
100.0000
gduggal-bwavardINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
75.4333
60.8225
99.2832
50.1786
28118127721
50.0000
gduggal-bwaplatINDELD16_PLUSlowcmp_SimpleRepeat_quadTR_11to50*
73.1222
57.8728
99.2832
78.7023
55540455442
50.0000