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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1261 1262 1263 1264 1265 1266 1267 1268 1269 ... 1720 1721 » 63201-63250 / 86044 show all
ltrigg-rtg1	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	hetalt	97.1871	95.2331	99.2231	35.3659	899	45	894	7	7	100.0000
jli-custom	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331	*	99.4393	99.6564	99.2231	66.7595	31036	107	31036	243	19	7.8189
jli-custom	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	*	99.4393	99.6564	99.2231	66.7595	31036	107	31036	243	19	7.8189
gduggal-bwavard	INDEL	I1_5	map_l100_m2_e1	homalt	97.2587	95.3704	99.2233	74.6305	515	25	511	4	2	50.0000
jli-custom	INDEL	D6_15	lowcmp_SimpleRepeat_quadTR_51to200	hetalt	97.2401	95.3342	99.2238	23.4653	756	37	767	6	5	83.3333
ckim-vqsr	INDEL	D6_15	lowcmp_SimpleRepeat_quadTR_51to200	hetalt	97.2401	95.3342	99.2238	23.4653	756	37	767	6	6	100.0000
ckim-gatk	INDEL	D6_15	lowcmp_SimpleRepeat_quadTR_51to200	hetalt	97.2401	95.3342	99.2238	23.4653	756	37	767	6	6	100.0000
ckim-isaac	INDEL	*	lowcmp_SimpleRepeat_diTR_51to200	hetalt	78.3824	64.7764	99.2239	34.3044	811	441	895	7	4	57.1429
jlack-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	*	99.3078	99.3917	99.2240	48.4791	2941	18	2941	23	2	8.6957
anovak-vg	SNP	*	map_siren	homalt	93.9262	89.1653	99.2241	49.9600	49180	5976	48469	379	316	83.3773
jli-custom	SNP	tv	map_l125_m0_e0	*	98.7959	98.3713	99.2242	70.3527	6523	108	6523	51	18	35.2941
bgallagher-sentieon	SNP	ti	map_l125_m1_e0	*	99.3257	99.4273	99.2243	71.0550	29167	168	29163	228	42	18.4211
gduggal-bwavard	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	59.7005	42.6942	99.2246	54.0503	4903	6581	4863	38	33	86.8421
jmaeng-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	99.2248	99.2248	99.2248	63.9161	256	2	256	2	2	100.0000
raldana-dualsentieon	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	99.2248	99.2248	99.2248	62.6628	256	2	256	2	2	100.0000
ckim-dragen	INDEL	D6_15	lowcmp_SimpleRepeat_quadTR_51to200	hetalt	97.3061	95.4603	99.2248	24.1920	757	36	768	6	6	100.0000
ckim-vqsr	INDEL	*	map_l125_m2_e1	homalt	99.2248	99.2248	99.2248	87.3859	768	6	768	6	3	50.0000
bgallagher-sentieon	SNP	ti	map_l125_m2_e0	*	99.3281	99.4316	99.2249	72.6504	30086	172	30082	235	42	17.8723
ltrigg-rtg1	INDEL	*	map_l100_m2_e1	*	97.3272	95.5005	99.2250	80.3823	3587	169	3585	28	7	25.0000
hfeng-pmm1	INDEL	*	map_siren	*	98.7669	98.3131	99.2250	80.4107	7285	125	7298	57	12	21.0526
jlack-gatk	SNP	tv	lowcmp_SimpleRepeat_diTR_11to50	het	99.3694	99.5142	99.2251	69.4063	3073	15	3073	24	12	50.0000
qzeng-custom	INDEL	I1_5	*	homalt	99.1725	99.1196	99.2255	48.3268	59896	532	59833	467	326	69.8073
hfeng-pmm1	INDEL	*	map_l125_m2_e1	homalt	99.2899	99.3540	99.2258	85.3746	769	5	769	6	3	50.0000
cchapple-custom	INDEL	I6_15	HG002compoundhet	het	96.1554	93.2692	99.2258	33.4003	194	14	9869	77	72	93.5065
ndellapenna-hhga	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	*	99.4268	99.6283	99.2261	57.2682	2948	11	2949	23	1	4.3478
jlack-gatk	INDEL	*	lowcmp_SimpleRepeat_quadTR_51to200	hetalt	95.9073	92.8033	99.2261	33.2760	1109	86	1154	9	8	88.8889
mlin-fermikit	INDEL	D1_5	lowcmp_SimpleRepeat_homopolymer_6to10	het	98.6655	98.1110	99.2262	52.5551	14491	279	14491	113	109	96.4602
ndellapenna-hhga	INDEL	I1_5	map_l100_m1_e0	homalt	99.1304	99.0347	99.2263	80.8802	513	5	513	4	2	50.0000
ltrigg-rtg1	INDEL	I1_5	map_l100_m1_e0	homalt	99.3235	99.4208	99.2263	79.9379	515	3	513	4	2	50.0000
jli-custom	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	*	98.4961	97.7763	99.2266	43.2593	20138	458	20142	157	149	94.9045
asubramanian-gatk	INDEL	*	lowcmp_SimpleRepeat_triTR_11to50	*	99.0488	98.8712	99.2269	57.4163	6657	76	6931	54	10	18.5185
bgallagher-sentieon	INDEL	I1_5	map_siren	het	99.0779	98.9292	99.2271	81.4696	1663	18	1669	13	1	7.6923
hfeng-pmm3	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331	*	97.9085	96.6244	99.2272	64.2470	63145	2206	62918	490	402	82.0408
hfeng-pmm3	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	*	97.9085	96.6244	99.2272	64.2470	63145	2206	62918	490	402	82.0408
ckim-isaac	INDEL	D1_5	HG002compoundhet	hetalt	92.5735	86.7561	99.2273	35.2319	8863	1353	9117	71	65	91.5493
egarrison-hhga	INDEL	*	HG002compoundhet	hetalt	84.8570	74.1223	99.2275	55.5672	18664	6516	18112	141	123	87.2340
gduggal-bwafb	INDEL	D1_5	lowcmp_SimpleRepeat_diTR_11to50	het	97.6431	96.1084	99.2277	42.1750	10002	405	15032	117	72	61.5385
gduggal-bwaplat	SNP	tv	HG002complexvar	hetalt	90.9054	83.8710	99.2278	44.0605	260	50	257	2	2	100.0000
gduggal-bwaplat	SNP	*	HG002complexvar	hetalt	90.9054	83.8710	99.2278	44.0605	260	50	257	2	2	100.0000
bgallagher-sentieon	INDEL	D1_5	map_l100_m0_e0	homalt	99.4197	99.6124	99.2278	83.8529	257	1	257	2	2	100.0000
hfeng-pmm2	INDEL	D1_5	map_l100_m0_e0	homalt	99.4197	99.6124	99.2278	81.9638	257	1	257	2	2	100.0000
hfeng-pmm3	INDEL	D6_15	*	homalt	99.3845	99.5416	99.2279	50.7795	6297	29	6297	49	45	91.8367
ghariani-varprowl	SNP	ti	HG002complexvar	het	99.4535	99.6801	99.2280	19.8744	313754	1007	313878	2442	84	3.4398
egarrison-hhga	SNP	ti	map_l250_m0_e0	het	97.7729	96.3597	99.2282	93.4065	900	34	900	7	1	14.2857
jmaeng-gatk	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	98.9011	98.5761	99.2282	89.6010	900	13	900	7	6	85.7143
egarrison-hhga	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	98.8850	98.5441	99.2284	79.4839	3858	57	3858	30	23	76.6667
ndellapenna-hhga	INDEL	I1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	hetalt	97.1729	95.2004	99.2289	61.5550	5653	285	5662	44	38	86.3636
raldana-dualsentieon	INDEL	D6_15	HG002complexvar	*	96.9018	94.6813	99.2289	57.2443	5020	282	5019	39	37	94.8718
jlack-gatk	INDEL	D16_PLUS	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.0110	98.7939	99.2291	68.2739	901	11	901	7	5	71.4286
bgallagher-sentieon	INDEL	D1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.5837	99.9406	99.2292	75.9456	21886	13	21886	170	169	99.4118

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