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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecision Frac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
62601-62650 / 86044 show all
bgallagher-sentieonINDEL*map_l100_m2_e0hetalt
95.0068
91.2000
99.1453
86.4111
1141111610
0.0000
ndellapenna-hhgaINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
74.2193
59.3086
99.1453
28.8754
4049277837123227
84.3750
ndellapenna-hhgaINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
98.0973
97.0711
99.1453
74.0433
4641446443
75.0000
rpoplin-dv42INDELD1_5map_l250_m2_e0het
97.4790
95.8678
99.1453
95.3828
116511610
0.0000
rpoplin-dv42INDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
88.5924
80.0699
99.1453
49.0196
2295723222
100.0000
ltrigg-rtg2INDELC1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
0.0000
0.0000
99.1453
95.9585
0011610
0.0000
egarrison-hhgaINDELD1_5lowcmp_SimpleRepeat_quadTR_11to50hetalt
78.8405
65.4387
99.1453
42.4354
97751692887
87.5000
egarrison-hhgaINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhet
97.0711
95.0820
99.1453
67.2269
116611611
100.0000
egarrison-hhgaINDELI6_15lowcmp_SimpleRepeat_triTR_11to50het
97.0711
95.0820
99.1453
62.8571
116611611
100.0000
dgrover-gatkINDEL*map_l100_m2_e0hetalt
95.0068
91.2000
99.1453
87.6190
1141111610
0.0000
ckim-isaacINDELD1_5lowcmp_SimpleRepeat_triTR_11to50*
98.0651
97.0076
99.1459
33.5614
395512239473424
70.5882
bgallagher-sentieonSNPtvlowcmp_AllRepeats_lt51bp_gt95identity_merged*
99.4994
99.8555
99.1459
64.4153
27638402762823820
8.4034
dgrover-gatkINDELD16_PLUSlowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
95.4946
92.1026
99.1461
40.7199
89877104599
100.0000
gduggal-bwavardSNPtv*het
99.1377
99.1291
99.1462
30.0519
586551515358408950301454
28.9066
jmaeng-gatkSNP*lowcmp_SimpleRepeat_quadTR_11to50*
99.3937
99.6425
99.1462
42.0410
1811865181151562
1.2821
gduggal-snapvardINDELI1_5map_l100_m2_e0homalt
94.4658
90.2072
99.1465
74.1639
4795269763
50.0000
hfeng-pmm2INDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331het
97.7268
96.3470
99.1467
74.4062
1899721859168
50.0000
hfeng-pmm2INDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
97.7268
96.3470
99.1467
74.4062
1899721859168
50.0000
qzeng-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
88.4879
79.8982
99.1469
44.6823
13347335832542824
85.7143
qzeng-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
88.4879
79.8982
99.1469
44.6823
13347335832542824
85.7143
ltrigg-rtg1INDELI6_15lowcmp_SimpleRepeat_diTR_11to50het
98.2332
97.3361
99.1471
75.0399
4751346540
0.0000
hfeng-pmm2SNPtvmap_l125_m2_e0*
99.2975
99.4481
99.1474
73.9287
16398911639614116
11.3475
gduggal-snapplatSNPti*het
98.9857
98.8246
99.1474
28.1840
1266829150681267456108991576
14.4600
bgallagher-sentieonINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
98.7246
98.3051
99.1477
70.1442
348634933
100.0000
qzeng-customSNPtvmap_l100_m2_e0homalt
87.6918
78.6086
99.1482
62.9624
7243197172176261
98.3871
jli-customINDELI6_15lowcmp_AllRepeats_lt51bp_gt95identity_merged*
97.7287
96.3493
99.1483
61.3786
512019451224431
70.4545
qzeng-customSNP*map_l150_m1_e0homalt
80.0720
67.1516
99.1488
70.4941
7570370374556464
100.0000
asubramanian-gatkINDEL*map_sirenhetalt
96.0386
93.1174
99.1489
87.5133
2301723320
0.0000
ltrigg-rtg2INDELD1_5map_l150_m1_e0het
97.5790
96.0581
99.1489
78.9615
4631946640
0.0000
gduggal-bwaplatSNPtimap_l150_m2_e0het
75.1762
60.5388
99.1490
91.7226
7798508378066722
32.8358
jlack-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
99.5086
99.8706
99.1491
56.7671
617686176532
3.7736
gduggal-bwaplatSNPtimap_l125_m2_e0het
80.5577
67.8375
99.1492
88.7803
1280560711281911031
28.1818
bgallagher-sentieonSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331*
99.3414
99.5344
99.1492
66.7959
309981453099826616
6.0150
bgallagher-sentieonSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
99.3414
99.5344
99.1492
66.7959
309981453099826616
6.0150
ckim-vqsrINDELI1_5segdup*
99.0079
98.8669
99.1493
95.7156
104712104992
22.2222
hfeng-pmm1INDELI1_5map_l125_m1_e0*
98.6079
98.0723
99.1495
84.7395
8141681672
28.5714
hfeng-pmm1SNPtvmap_l150_m0_e0het
98.7997
98.4523
99.1495
80.8249
2799442798243
12.5000
hfeng-pmm3SNPtvmap_l250_m2_e0homalt
99.3610
99.5731
99.1498
88.0265
933493384
50.0000
ckim-dragenSNPtvlowcmp_AllRepeats_51to200bp_gt95identity_merged*
98.7487
98.3509
99.1498
68.6809
1491251516132
15.3846
ltrigg-rtg2INDELD6_15HG002complexvarhet
98.5457
97.9487
99.1499
50.4465
3056642916258
32.0000
gduggal-bwavardINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
72.3907
57.0056
99.1501
60.4038
71253770065
83.3333
gduggal-bwavardINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
72.3907
57.0056
99.1501
60.4038
71253770065
83.3333
ckim-vqsrSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
99.1782
99.2063
99.1501
88.9866
17501417501513
86.6667
hfeng-pmm2INDELD6_15HG002complexvarhomalt
99.4885
99.8289
99.1504
61.5359
116721167109
90.0000
ckim-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
99.2068
99.2630
99.1506
88.9811
17511317511513
86.6667
ltrigg-rtg2INDEL*map_l150_m1_e0*
97.5313
95.9641
99.1506
83.9469
1284541284111
9.0909
hfeng-pmm2SNPtvmap_l250_m2_e0homalt
99.4146
99.6798
99.1507
88.1241
934393484
50.0000
hfeng-pmm1SNPtvmap_l250_m2_e0homalt
99.4146
99.6798
99.1507
88.0623
934393484
50.0000
astatham-gatkINDELI1_5segdup*
99.1033
99.0557
99.1509
94.5434
104910105192
22.2222
ckim-dragenINDELI6_15lowcmp_AllRepeats_lt51bp_gt95identity_merged*
97.9137
96.7068
99.1511
64.1489
513917551394440
90.9091