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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecision Frac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
62451-62500 / 86044 show all
jmaeng-gatkINDELI6_15lowcmp_SimpleRepeat_diTR_11to50*
96.4668
93.9469
99.1255
62.0415
226614622672013
65.0000
ltrigg-rtg1INDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
95.8170
92.7219
99.1258
58.3884
377129637423331
93.9394
dgrover-gatkINDELD1_5map_sirenhet
99.2553
99.3852
99.1259
82.2139
2263142268201
5.0000
ckim-gatkINDEL*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.5208
99.9187
99.1260
74.4622
307362530736271264
97.4170
mlin-fermikitSNPtiHG002compoundhethet
93.4304
88.3535
99.1262
38.1960
8398110783957414
18.9189
jli-customINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331het
98.5394
97.9595
99.1262
72.9162
628913162395536
65.4545
jli-customINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
98.5394
97.9595
99.1262
72.9162
628913162395536
65.4545
ckim-vqsrINDELI6_15lowcmp_SimpleRepeat_diTR_11to50*
96.5108
94.0299
99.1263
61.5359
226814422692015
75.0000
rpoplin-dv42INDELI1_5lowcmp_SimpleRepeat_diTR_11to50*
96.9793
94.9232
99.1263
57.7580
544129154464847
97.9167
gduggal-bwaplatSNPtimap_l100_m2_e0het
87.1494
77.7546
99.1265
83.6970
2381068122383221063
30.0000
dgrover-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
99.2892
99.4524
99.1266
89.6532
908590887
87.5000
egarrison-hhgaINDELD1_5lowcmp_SimpleRepeat_diTR_51to200hetalt
65.6565
49.0835
99.1266
31.0241
24125022721
50.0000
ltrigg-rtg1INDELD1_5map_l150_m1_e0homalt
99.3435
99.5614
99.1266
85.6156
227122722
100.0000
ltrigg-rtg2INDEL*map_sirenhetalt
94.4986
90.2834
99.1266
91.2895
2232422722
100.0000
ndellapenna-hhgaSNPtvmap_l250_m1_e0het
97.1755
95.2994
99.1269
86.3845
1703841703158
53.3333
ckim-gatkINDELI6_15lowcmp_SimpleRepeat_diTR_11to50*
96.5548
94.1128
99.1270
61.5152
227014222712015
75.0000
egarrison-hhgaINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
96.8401
94.6563
99.1270
30.3647
451725545424038
95.0000
ltrigg-rtg1INDELI1_5map_sirenhet
97.6073
96.1333
99.1272
75.0467
1616651590140
0.0000
dgrover-gatkSNPtimap_l125_m2_e0het
99.2165
99.3060
99.1273
77.0589
187451311874116534
20.6061
ckim-vqsrINDELD1_5lowcmp_SimpleRepeat_diTR_11to50het
99.2848
99.4427
99.1274
50.6623
1034958103389183
91.2088
asubramanian-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhetalt
92.0423
85.9024
99.1274
31.9073
11091821136108
80.0000
bgallagher-sentieonINDELI1_5map_l125_m2_e0homalt
99.5620
100.0000
99.1279
84.2419
341034132
66.6667
astatham-gatkINDELI1_5map_l125_m2_e0homalt
99.5620
100.0000
99.1279
84.4625
341034132
66.6667
egarrison-hhgaSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
98.9430
98.7588
99.1279
78.7129
23873023872117
80.9524
jmaeng-gatkINDELI1_5map_l125_m2_e1homalt
99.2722
99.4169
99.1279
84.8990
341234132
66.6667
ndellapenna-hhgaINDELI1_5map_l125_m2_e1homalt
99.2722
99.4169
99.1279
85.2297
341234131
33.3333
jli-customINDELI1_5map_l125_m2_e0homalt
99.5620
100.0000
99.1279
83.2522
341034132
66.6667
hfeng-pmm3INDELI1_5map_l125_m2_e0homalt
99.5620
100.0000
99.1279
82.7569
341034132
66.6667
hfeng-pmm2INDELI1_5map_l125_m2_e0homalt
99.5620
100.0000
99.1279
83.2766
341034132
66.6667
hfeng-pmm1INDELI1_5map_l125_m2_e0homalt
99.5620
100.0000
99.1279
83.6268
341034132
66.6667
gduggal-bwaplatINDELD1_5lowcmp_SimpleRepeat_quadTR_11to50homalt
85.0109
74.4135
99.1279
56.8517
272893827282421
87.5000
gduggal-bwaplatINDELI1_5map_l125_m2_e1het
80.0469
67.1260
99.1279
94.7816
34116734131
33.3333
ckim-gatkINDEL*map_l100_m2_e0homalt
99.1677
99.2070
99.1284
85.1721
1251101251116
54.5455
mlin-fermikitINDEL*lowcmp_SimpleRepeat_diTR_51to200hetalt
47.0332
30.8307
99.1285
43.6118
38686645543
75.0000
jmaeng-gatkINDELD16_PLUSlowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.4536
99.7807
99.1285
70.2141
910291085
62.5000
bgallagher-sentieonINDELI6_15lowcmp_AllRepeats_lt51bp_gt95identity_merged*
97.7097
96.3304
99.1289
64.0826
511919551214538
84.4444
ckim-vqsrINDEL*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.5126
99.8992
99.1290
74.4665
307303130730270263
97.4074
gduggal-snapfbSNP*func_cdshet
99.5360
99.9462
99.1291
30.5670
11155611155981
1.0204
hfeng-pmm2INDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331*
97.2768
95.4919
99.1297
62.3353
603728560375343
81.1321
hfeng-pmm2INDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
97.2768
95.4919
99.1297
62.3353
603728560375343
81.1321
ckim-vqsrINDELI16_PLUS*het
98.1949
97.2774
99.1298
76.5400
26447426202310
43.4783
dgrover-gatkINDELI1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.5071
99.8869
99.1302
72.8167
3533435333131
100.0000
ckim-gatkINDELI1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.5071
99.8869
99.1302
72.7419
3533435333131
100.0000
ckim-gatkINDELI1_5map_l125_m2_e1homalt
99.4186
99.7085
99.1304
85.2375
342134232
66.6667
dgrover-gatkINDELI1_5map_l125_m2_e1homalt
99.4186
99.7085
99.1304
84.9608
342134232
66.6667
dgrover-gatkINDEL*map_l100_m1_e0hetalt
94.9615
91.1290
99.1304
86.7512
1131111410
0.0000
ckim-vqsrINDEL*map_l150_m1_e0homalt
98.9154
98.7013
99.1304
89.0840
456645642
50.0000
ckim-vqsrINDEL*map_l250_m2_e1homalt
98.7013
98.2759
99.1304
95.7549
114211411
100.0000
jli-customSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
99.3289
99.5281
99.1304
78.8666
4218204218376
16.2162
jmaeng-gatkSNPti*hetalt
98.5307
97.9381
99.1304
54.1467
5701257055
100.0000