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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1245 1246 1247 1248 1249 1250 1251 1252 1253 ... 1720 1721 » 62401-62450 / 86044 show all
mlin-fermikit	INDEL	D1_5	lowcmp_SimpleRepeat_homopolymer_6to10	*	98.6770	98.2373	99.1206	53.5009	24912	447	24909	221	216	97.7376
asubramanian-gatk	INDEL	*	HG002compoundhet	hetalt	95.7396	92.5814	99.1208	52.6709	23312	1868	23449	208	188	90.3846
ckim-isaac	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	96.7448	94.4798	99.1212	50.4094	3714	217	3722	33	3	9.0909
dgrover-gatk	INDEL	I1_5	lowcmp_SimpleRepeat_diTR_11to50	homalt	99.5587	100.0000	99.1213	72.9177	564	0	564	5	5	100.0000
astatham-gatk	INDEL	I1_5	lowcmp_SimpleRepeat_diTR_11to50	homalt	99.5587	100.0000	99.1213	72.7881	564	0	564	5	5	100.0000
ckim-gatk	INDEL	I1_5	lowcmp_SimpleRepeat_diTR_11to50	homalt	99.5587	100.0000	99.1213	72.8401	564	0	564	5	5	100.0000
ltrigg-rtg2	SNP	ti	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	99.3250	99.5294	99.1213	51.0494	17767	84	17824	158	11	6.9620
jmaeng-gatk	INDEL	I6_15	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	97.2881	95.5213	99.1216	64.1698	5076	238	5078	45	35	77.7778
jlack-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	99.5589	100.0000	99.1217	56.3407	1580	0	1580	14	0	0.0000
ndellapenna-hhga	INDEL	I1_5	map_l100_m2_e1	het	98.3825	97.6543	99.1217	84.6554	791	19	790	7	0	0.0000
egarrison-hhga	SNP	*	HG002compoundhet	homalt	99.2639	99.4064	99.1218	35.3785	10718	64	10722	95	82	86.3158
jmaeng-gatk	INDEL	D16_PLUS	lowcmp_AllRepeats_51to200bp_gt95identity_merged	hetalt	94.0868	89.5385	99.1220	39.9179	873	102	1016	9	9	100.0000
bgallagher-sentieon	SNP	tv	map_l100_m2_e1	*	99.3647	99.6084	99.1222	68.5080	25184	99	25180	223	31	13.9013
gduggal-bwaplat	SNP	ti	map_l150_m1_e0	het	74.1845	59.2724	99.1222	91.2737	7332	5038	7340	65	21	32.3077
anovak-vg	SNP	tv	map_l125_m2_e0	homalt	89.0712	80.8709	99.1223	69.1421	4866	1151	4856	43	32	74.4186
hfeng-pmm2	SNP	tv	map_l125_m1_e0	*	99.2768	99.4318	99.1223	72.3649	15925	91	15923	141	16	11.3475
hfeng-pmm3	INDEL	I16_PLUS	HG002complexvar	hetalt	96.8227	94.6269	99.1228	69.7613	317	18	339	3	3	100.0000
dgrover-gatk	INDEL	D16_PLUS	lowcmp_SimpleRepeat_quadTR_11to50	hetalt	98.4903	97.8659	99.1228	38.1555	321	7	339	3	3	100.0000
dgrover-gatk	INDEL	I1_5	map_l100_m2_e0	*	98.9764	98.8304	99.1228	85.1466	1352	16	1356	12	4	33.3333
ckim-vqsr	INDEL	*	map_l250_m2_e0	homalt	98.6900	98.2609	99.1228	95.6900	113	2	113	1	1	100.0000
ckim-vqsr	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	99.0685	99.0142	99.1228	89.4371	904	9	904	8	7	87.5000
ndellapenna-hhga	INDEL	I1_5	map_l125_m2_e0	homalt	99.2679	99.4135	99.1228	84.9406	339	2	339	3	1	33.3333
mlin-fermikit	INDEL	*	func_cds	homalt	99.5595	100.0000	99.1228	33.5277	226	0	226	2	2	100.0000
rpoplin-dv42	INDEL	*	lowcmp_SimpleRepeat_triTR_51to200	hetalt	94.1211	89.6000	99.1228	23.4899	112	13	113	1	1	100.0000
ltrigg-rtg2	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	90.6188	83.4586	99.1228	73.6111	111	22	113	1	0	0.0000
ltrigg-rtg2	INDEL	I1_5	lowcmp_SimpleRepeat_homopolymer_6to10	hetalt	98.2886	97.4684	99.1228	83.5498	308	8	339	3	3	100.0000
ltrigg-rtg1	INDEL	C6_15	HG002compoundhet	hetalt	0.0000	0.0000	99.1228	86.3309	0	0	113	1	1	100.0000
jmaeng-gatk	INDEL	I1_5	map_l125_m2_e0	homalt	99.2679	99.4135	99.1228	84.7048	339	2	339	3	2	66.6667
gduggal-snapplat	INDEL	D1_5	map_l100_m0_e0	homalt	86.0150	75.9690	99.1228	89.0173	196	62	226	2	0	0.0000
gduggal-snapvard	INDEL	I1_5	func_cds	homalt	96.1113	93.2773	99.1228	19.1489	111	8	113	1	1	100.0000
cchapple-custom	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	99.5595	100.0000	99.1228	50.4348	343	0	339	3	2	66.6667
jli-custom	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	99.4971	99.8738	99.1234	45.0258	4747	6	4749	42	40	95.2381
ckim-isaac	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	96.5815	94.1667	99.1234	62.7989	1356	84	1357	12	7	58.3333
ckim-gatk	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	99.1238	99.1238	99.1238	89.4268	905	8	905	8	7	87.5000
hfeng-pmm2	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	92.5234	86.7470	99.1239	87.6564	792	121	792	7	3	42.8571
bgallagher-sentieon	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*	97.2930	95.5286	99.1239	61.6524	8033	376	8033	71	62	87.3239
bgallagher-sentieon	INDEL	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	99.0261	98.9285	99.1239	73.3821	93437	1012	93346	825	733	88.8485
gduggal-snapvard	INDEL	I1_5	map_l100_m1_e0	homalt	94.6381	90.5405	99.1241	73.0527	469	49	679	6	3	50.0000
gduggal-bwavard	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	59.5561	42.5651	99.1245	51.1308	1603	2163	1585	14	12	85.7143
gduggal-bwavard	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	59.5561	42.5651	99.1245	51.1308	1603	2163	1585	14	12	85.7143
rpoplin-dv42	INDEL	I1_5	lowcmp_SimpleRepeat_homopolymer_6to10	het	98.9799	98.8355	99.1247	71.3838	1358	16	1359	12	9	75.0000
jmaeng-gatk	INDEL	*	map_l150_m1_e0	homalt	98.5854	98.0519	99.1247	88.7105	453	9	453	4	3	75.0000
ghariani-varprowl	SNP	ti	func_cds	het	99.5080	99.8942	99.1249	31.7349	8495	9	8495	75	2	2.6667
raldana-dualsentieon	INDEL	*	map_l100_m2_e0	homalt	98.9674	98.8105	99.1249	82.9559	1246	15	1246	11	5	45.4545
gduggal-bwafb	INDEL	I1_5	map_l125_m2_e0	homalt	99.4152	99.7067	99.1254	85.4907	340	1	340	3	1	33.3333
ckim-gatk	INDEL	I1_5	map_l125_m2_e0	homalt	99.4152	99.7067	99.1254	85.0480	340	1	340	3	2	66.6667
ckim-isaac	INDEL	D1_5	segdup	het	98.8393	98.5549	99.1254	93.5804	682	10	680	6	2	33.3333
dgrover-gatk	INDEL	I1_5	map_l125_m2_e0	homalt	99.4152	99.7067	99.1254	84.7216	340	1	340	3	2	66.6667
hfeng-pmm1	INDEL	I16_PLUS	HG002complexvar	hetalt	96.9799	94.9254	99.1254	69.6996	318	17	340	3	3	100.0000
asubramanian-gatk	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	97.2687	95.4802	99.1254	71.1036	338	16	340	3	3	100.0000

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