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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1239 1240 1241 1242 1243 1244 1245 1246 1247 ... 1720 1721 » 62101-62150 / 86044 show all
ltrigg-rtg2	INDEL	I1_5	lowcmp_AllRepeats_51to200bp_gt95identity_merged	hetalt	96.1107	93.3110	99.0836	51.0924	837	60	865	8	8	100.0000
jlack-gatk	SNP	ti	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	99.4351	99.7890	99.0837	56.5880	27900	59	27899	258	21	8.1395
cchapple-custom	SNP	ti	segdup	het	99.4449	99.8088	99.0837	92.7182	12007	23	12003	111	5	4.5045
ckim-gatk	INDEL	*	map_l125_m2_e0	homalt	99.1487	99.2136	99.0838	87.3090	757	6	757	7	4	57.1429
raldana-dualsentieon	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	92.0134	85.8844	99.0844	88.5511	1515	249	1515	14	9	64.2857
rpoplin-dv42	SNP	tv	map_l150_m2_e1	*	98.9641	98.8437	99.0847	74.8658	11369	133	11367	105	61	58.0952
gduggal-snapvard	INDEL	I1_5	map_l125_m2_e1	homalt	95.0081	91.2536	99.0847	78.9803	313	30	433	4	2	50.0000
dgrover-gatk	SNP	tv	map_l100_m2_e0	het	99.3042	99.5246	99.0848	72.9235	15702	75	15698	145	24	16.5517
bgallagher-sentieon	SNP	ti	map_l100_m1_e0	het	99.2799	99.4757	99.0849	68.0556	29785	157	29778	275	38	13.8182
hfeng-pmm2	SNP	ti	map_l125_m2_e0	het	99.1742	99.2636	99.0849	75.4183	18737	139	18733	173	14	8.0925
jli-custom	INDEL	*	map_l125_m2_e0	homalt	99.2147	99.3447	99.0850	85.6014	758	5	758	7	4	57.1429
raldana-dualsentieon	SNP	*	map_l125_m1_e0	*	99.1433	99.2014	99.0854	69.5094	44965	362	44959	415	15	3.6145
jmaeng-gatk	INDEL	I1_5	map_l125_m1_e0	homalt	99.2366	99.3884	99.0854	83.4677	325	2	325	3	2	66.6667
hfeng-pmm1	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	homalt	99.2980	99.5114	99.0854	41.3691	5092	25	5092	47	47	100.0000
gduggal-bwavard	INDEL	I1_5	map_l125_m2_e1	homalt	97.1742	95.3353	99.0854	78.4211	327	16	325	3	1	33.3333
astatham-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_diTR_11to50	*	98.7654	98.4474	99.0855	41.1980	24159	381	24161	223	213	95.5157
rpoplin-dv42	SNP	tv	map_l100_m1_e0	het	99.1180	99.1503	99.0858	64.8238	15286	131	15282	141	59	41.8440
bgallagher-sentieon	SNP	tv	map_siren	het	99.3778	99.6714	99.0859	61.4179	28515	94	28510	263	27	10.2662
ckim-vqsr	INDEL	I6_15	HG002complexvar	*	98.1251	97.1828	99.0859	57.0293	4657	135	4661	43	42	97.6744
ckim-vqsr	SNP	ti	map_l125_m2_e1	*	71.0090	55.3306	99.0860	88.2132	16914	13655	16912	156	5	3.2051
astatham-gatk	INDEL	*	map_l125_m2_e0	homalt	99.2806	99.4758	99.0862	86.9395	759	4	759	7	4	57.1429
hfeng-pmm3	INDEL	*	map_l125_m2_e0	homalt	99.2806	99.4758	99.0862	84.5627	759	4	759	7	3	42.8571
ckim-gatk	INDEL	D6_15	HG002complexvar	het	99.0142	98.9423	99.0862	59.4709	3087	33	3036	28	22	78.5714
ltrigg-rtg2	INDEL	D16_PLUS	HG002complexvar	het	95.2931	91.7796	99.0863	53.6689	1016	91	976	9	4	44.4444
egarrison-hhga	SNP	tv	HG002compoundhet	homalt	99.1596	99.2326	99.0866	43.1871	3362	26	3363	31	28	90.3226
ckim-isaac	INDEL	I1_5	map_l125_m2_e1	homalt	77.2242	63.2653	99.0868	80.8734	217	126	217	2	0	0.0000
anovak-vg	SNP	tv	map_l250_m2_e0	homalt	81.7550	69.5838	99.0868	89.1941	652	285	651	6	4	66.6667
ckim-dragen	INDEL	I6_15	lowcmp_AllRepeats_51to200bp_gt95identity_merged	het	97.2845	95.5466	99.0868	80.4290	236	11	217	2	1	50.0000
ckim-dragen	SNP	ti	map_l250_m0_e0	homalt	99.3135	99.5413	99.0868	87.9769	434	2	434	4	3	75.0000
gduggal-bwaplat	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331	hetalt	80.2465	67.4262	99.0868	50.5085	1302	629	1302	12	11	91.6667
gduggal-bwaplat	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	hetalt	80.2465	67.4262	99.0868	50.5085	1302	629	1302	12	11	91.6667
rpoplin-dv42	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	*	97.0321	95.0607	99.0869	48.8550	5639	293	5643	52	49	94.2308
ckim-dragen	INDEL	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	98.9722	98.8576	99.0871	73.7310	93370	1079	93240	859	756	88.0093
ndellapenna-hhga	INDEL	I1_5	map_l100_m1_e0	het	98.5107	97.9408	99.0874	83.2679	761	16	760	7	0	0.0000
ltrigg-rtg1	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	99.2702	99.4536	99.0876	76.1116	546	3	543	5	1	20.0000
bgallagher-sentieon	SNP	*	map_l125_m1_e0	*	99.2644	99.4418	99.0876	71.3529	45074	253	45068	415	70	16.8675
dgrover-gatk	SNP	tv	map_l100_m2_e1	het	99.3081	99.5294	99.0878	72.9526	15863	75	15859	146	24	16.4384
dgrover-gatk	INDEL	I1_5	map_l125_m1_e0	homalt	99.3902	99.6942	99.0881	83.5088	326	1	326	3	2	66.6667
ndellapenna-hhga	INDEL	I1_5	map_l125_m1_e0	homalt	99.3902	99.6942	99.0881	83.4507	326	1	326	3	1	33.3333
gduggal-bwaplat	INDEL	D16_PLUS	*	hetalt	80.2709	67.4599	99.0881	50.5635	1304	629	1304	12	11	91.6667
gduggal-bwaplat	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	94.3409	90.0277	99.0881	61.2028	325	36	326	3	1	33.3333
gduggal-bwafb	INDEL	I1_5	map_l125_m1_e0	homalt	99.3902	99.6942	99.0881	84.2433	326	1	326	3	1	33.3333
gduggal-bwaplat	INDEL	*	segdup	het	93.7455	88.9495	99.0881	97.0073	1304	162	1304	12	6	50.0000
ckim-gatk	INDEL	I1_5	map_l125_m1_e0	homalt	99.3902	99.6942	99.0881	83.8329	326	1	326	3	2	66.6667
hfeng-pmm2	SNP	tv	map_l100_m1_e0	het	99.2617	99.4357	99.0884	69.5075	15330	87	15326	141	12	8.5106
raldana-dualsentieon	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331	het	97.4108	95.7889	99.0885	72.8253	1888	83	1848	17	10	58.8235
raldana-dualsentieon	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het	97.4108	95.7889	99.0885	72.8253	1888	83	1848	17	10	58.8235
gduggal-bwafb	SNP	*	map_siren	*	99.2387	99.3893	99.0885	58.6242	145335	893	145339	1337	225	16.8287
hfeng-pmm2	INDEL	D6_15	*	homalt	99.3853	99.6838	99.0886	51.6854	6306	20	6306	58	54	93.1034
gduggal-bwaplat	SNP	*	map_l125_m0_e0	het	67.0117	50.6238	99.0887	93.0436	6411	6253	6415	59	19	32.2034

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