PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
61801-61850 / 86044 show all | |||||||||||||||
| qzeng-custom | SNP | ti | map_l150_m0_e0 | homalt | 72.5105 | 57.1894 | 99.0446 | 79.2025 | 1579 | 1182 | 1555 | 15 | 15 | 100.0000 | |
| egarrison-hhga | INDEL | I1_5 | map_siren | het | 98.8677 | 98.6913 | 99.0448 | 81.1755 | 1659 | 22 | 1659 | 16 | 2 | 12.5000 | |
| gduggal-bwafb | SNP | ti | HG002compoundhet | homalt | 99.3188 | 99.5943 | 99.0449 | 33.6250 | 7364 | 30 | 7363 | 71 | 58 | 81.6901 | |
| ckim-gatk | SNP | ti | map_siren | * | 94.6168 | 90.5675 | 99.0452 | 64.7326 | 90889 | 9466 | 90874 | 876 | 96 | 10.9589 | |
| hfeng-pmm1 | SNP | * | map_l250_m2_e1 | * | 98.8775 | 98.7104 | 99.0452 | 88.5497 | 7884 | 103 | 7884 | 76 | 17 | 22.3684 | |
| gduggal-bwavard | SNP | ti | map_l250_m0_e0 | homalt | 97.4326 | 95.8716 | 99.0453 | 92.4843 | 418 | 18 | 415 | 4 | 3 | 75.0000 | |
| jli-custom | SNP | tv | map_l250_m2_e0 | * | 98.1086 | 97.1895 | 99.0453 | 86.0929 | 2801 | 81 | 2801 | 27 | 12 | 44.4444 | |
| ltrigg-rtg2 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 94.6844 | 90.6909 | 99.0458 | 31.4136 | 1549 | 159 | 1557 | 15 | 15 | 100.0000 | |
| gduggal-bwafb | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 99.0458 | 99.0458 | 99.0458 | 70.6113 | 519 | 5 | 519 | 5 | 4 | 80.0000 | |
| gduggal-snapplat | SNP | tv | segdup | * | 98.7367 | 98.4294 | 99.0458 | 94.5607 | 8398 | 134 | 8408 | 81 | 13 | 16.0494 | |
| mlin-fermikit | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 77.2779 | 63.3540 | 99.0460 | 46.3471 | 1122 | 649 | 1142 | 11 | 11 | 100.0000 | |
| hfeng-pmm2 | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | het | 97.7812 | 96.5482 | 99.0462 | 60.2645 | 15216 | 544 | 15057 | 145 | 123 | 84.8276 | |
| hfeng-pmm3 | SNP | tv | map_l150_m0_e0 | het | 98.8723 | 98.6986 | 99.0466 | 80.7883 | 2806 | 37 | 2805 | 27 | 0 | 0.0000 | |
| jli-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 99.2174 | 99.3885 | 99.0469 | 69.9044 | 3738 | 23 | 3741 | 36 | 34 | 94.4444 | |
| jli-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 99.2174 | 99.3885 | 99.0469 | 69.9044 | 3738 | 23 | 3741 | 36 | 34 | 94.4444 | |
| raldana-dualsentieon | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | * | 99.0674 | 99.0875 | 99.0472 | 37.3044 | 7384 | 68 | 7381 | 71 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | I1_5 | map_l150_m0_e0 | het | 98.0997 | 97.1698 | 99.0476 | 92.0814 | 103 | 3 | 104 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | I6_15 | map_l100_m1_e0 | * | 94.9772 | 91.2281 | 99.0476 | 84.4214 | 104 | 10 | 104 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 93.6008 | 88.7218 | 99.0476 | 86.7591 | 118 | 15 | 104 | 1 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | I6_15 | map_l100_m1_e0 | * | 94.9772 | 91.2281 | 99.0476 | 85.2941 | 104 | 10 | 104 | 1 | 1 | 100.0000 | |
| hfeng-pmm1 | INDEL | I6_15 | map_l100_m1_e0 | * | 94.9772 | 91.2281 | 99.0476 | 85.5769 | 104 | 10 | 104 | 1 | 1 | 100.0000 | |
| hfeng-pmm1 | INDEL | D1_5 | map_l250_m1_e0 | het | 96.2963 | 93.6937 | 99.0476 | 93.5858 | 104 | 7 | 104 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | I6_15 | map_l100_m2_e1 | * | 95.5234 | 92.2414 | 99.0476 | 82.1124 | 107 | 9 | 104 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | * | map_l250_m2_e0 | * | 96.1163 | 93.3535 | 99.0476 | 93.0417 | 309 | 22 | 312 | 3 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | I1_5 | map_l125_m2_e1 | * | 97.4288 | 95.8621 | 99.0476 | 82.9442 | 834 | 36 | 832 | 8 | 1 | 12.5000 | |
| ltrigg-rtg1 | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 98.3617 | 97.6852 | 99.0476 | 60.3025 | 211 | 5 | 208 | 2 | 1 | 50.0000 | |
| gduggal-bwavard | INDEL | I1_5 | map_l125_m1_e0 | homalt | 97.5126 | 96.0245 | 99.0476 | 76.1905 | 314 | 13 | 312 | 3 | 1 | 33.3333 | |
| bgallagher-sentieon | INDEL | * | map_l125_m1_e0 | homalt | 99.2502 | 99.4536 | 99.0476 | 85.8491 | 728 | 4 | 728 | 7 | 4 | 57.1429 | |
| egarrison-hhga | SNP | ti | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 98.7531 | 98.4597 | 99.0482 | 61.5420 | 1662 | 26 | 1665 | 16 | 8 | 50.0000 | |
| ltrigg-rtg1 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.4357 | 99.8255 | 99.0490 | 49.7611 | 4004 | 7 | 4062 | 39 | 0 | 0.0000 | |
| gduggal-snapvard | SNP | ti | segdup | het | 98.2336 | 97.4314 | 99.0491 | 94.0407 | 11721 | 309 | 11666 | 112 | 14 | 12.5000 | |
| ndellapenna-hhga | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 74.0374 | 59.1106 | 99.0498 | 29.9414 | 4785 | 3310 | 4378 | 42 | 35 | 83.3333 | |
| ltrigg-rtg1 | INDEL | * | map_l150_m2_e0 | het | 95.3640 | 91.9426 | 99.0499 | 82.6284 | 833 | 73 | 834 | 8 | 0 | 0.0000 | |
| jli-custom | INDEL | * | map_l100_m2_e0 | homalt | 99.1284 | 99.2070 | 99.0499 | 83.3333 | 1251 | 10 | 1251 | 12 | 6 | 50.0000 | |
| bgallagher-sentieon | SNP | ti | map_l100_m2_e0 | het | 99.2634 | 99.4775 | 99.0503 | 69.3746 | 30462 | 160 | 30455 | 292 | 38 | 13.0137 | |
| ltrigg-rtg1 | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 97.6901 | 96.3664 | 99.0506 | 57.6833 | 1273 | 48 | 1252 | 12 | 6 | 50.0000 | |
| gduggal-snapplat | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 92.2399 | 86.3055 | 99.0506 | 51.0836 | 3441 | 546 | 3443 | 33 | 14 | 42.4242 | |
| qzeng-custom | INDEL | I1_5 | map_l125_m1_e0 | homalt | 80.9911 | 68.5015 | 99.0506 | 83.1197 | 224 | 103 | 313 | 3 | 2 | 66.6667 | |
| ckim-dragen | SNP | tv | map_l250_m2_e1 | homalt | 99.1552 | 99.2600 | 99.0506 | 84.6353 | 939 | 7 | 939 | 9 | 7 | 77.7778 | |
| gduggal-bwafb | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 92.7620 | 87.2242 | 99.0507 | 45.1542 | 8104 | 1187 | 2713 | 26 | 26 | 100.0000 | |
| gduggal-bwafb | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 92.7620 | 87.2242 | 99.0507 | 45.1542 | 8104 | 1187 | 2713 | 26 | 26 | 100.0000 | |
| hfeng-pmm1 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 99.2113 | 99.3725 | 99.0508 | 63.8916 | 18052 | 114 | 18052 | 173 | 163 | 94.2197 | |
| hfeng-pmm1 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 99.2113 | 99.3725 | 99.0508 | 63.8916 | 18052 | 114 | 18052 | 173 | 163 | 94.2197 | |
| jli-custom | SNP | * | map_l125_m0_e0 | het | 98.5516 | 98.0575 | 99.0508 | 71.6081 | 12418 | 246 | 12418 | 119 | 39 | 32.7731 | |
| hfeng-pmm1 | INDEL | * | map_l100_m2_e0 | homalt | 99.2082 | 99.3656 | 99.0514 | 82.7233 | 1253 | 8 | 1253 | 12 | 5 | 41.6667 | |
| jmaeng-gatk | INDEL | D6_15 | HG002complexvar | het | 98.8845 | 98.7179 | 99.0517 | 59.4483 | 3080 | 40 | 3029 | 29 | 25 | 86.2069 | |
| mlin-fermikit | SNP | * | HG002compoundhet | het | 92.5921 | 86.9234 | 99.0518 | 44.4618 | 12324 | 1854 | 12327 | 118 | 22 | 18.6441 | |
| mlin-fermikit | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 98.5066 | 97.9670 | 99.0521 | 55.3862 | 16095 | 334 | 16093 | 154 | 147 | 95.4545 | |
| jlack-gatk | SNP | tv | HG002compoundhet | * | 99.3236 | 99.5965 | 99.0521 | 49.7619 | 8887 | 36 | 8882 | 85 | 24 | 28.2353 | |
| ckim-isaac | INDEL | I1_5 | map_l150_m1_e0 | het | 81.9608 | 69.8997 | 99.0521 | 91.9924 | 209 | 90 | 209 | 2 | 1 | 50.0000 | |