PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
61751-61800 / 86044 show all | |||||||||||||||
| eyeh-varpipe | INDEL | C1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.5169 | 100.0000 | 99.0385 | 92.1212 | 1 | 0 | 206 | 2 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | I1_5 | map_l150_m0_e0 | het | 97.6122 | 96.2264 | 99.0385 | 93.5323 | 102 | 4 | 103 | 1 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | I1_5 | map_l150_m0_e0 | het | 97.6122 | 96.2264 | 99.0385 | 92.2906 | 102 | 4 | 103 | 1 | 0 | 0.0000 | |
| jlack-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 98.1219 | 97.2222 | 99.0385 | 80.7050 | 105 | 3 | 103 | 1 | 0 | 0.0000 | |
| jlack-gatk | INDEL | I1_5 | map_l100_m1_e0 | homalt | 99.2293 | 99.4208 | 99.0385 | 80.7763 | 515 | 3 | 515 | 5 | 3 | 60.0000 | |
| asubramanian-gatk | INDEL | D1_5 | map_l150_m1_e0 | homalt | 94.4954 | 90.3509 | 99.0385 | 88.6957 | 206 | 22 | 206 | 2 | 1 | 50.0000 | |
| gduggal-bwafb | SNP | * | HG002complexvar | hetalt | 99.3569 | 99.6774 | 99.0385 | 46.2069 | 309 | 1 | 309 | 3 | 3 | 100.0000 | |
| gduggal-bwafb | SNP | tv | HG002complexvar | hetalt | 99.3569 | 99.6774 | 99.0385 | 46.2069 | 309 | 1 | 309 | 3 | 3 | 100.0000 | |
| gduggal-bwaplat | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 79.0727 | 65.8065 | 99.0385 | 90.3435 | 102 | 53 | 103 | 1 | 0 | 0.0000 | |
| bgallagher-sentieon | SNP | ti | map_l150_m1_e0 | * | 99.1792 | 99.3202 | 99.0387 | 75.5864 | 19578 | 134 | 19574 | 190 | 36 | 18.9474 | |
| ltrigg-rtg1 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 97.8670 | 96.7220 | 99.0393 | 65.6223 | 15550 | 527 | 15670 | 152 | 41 | 26.9737 | |
| ltrigg-rtg1 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 97.8670 | 96.7220 | 99.0393 | 65.6223 | 15550 | 527 | 15670 | 152 | 41 | 26.9737 | |
| jli-custom | SNP | tv | map_l100_m0_e0 | het | 98.7783 | 98.5184 | 99.0395 | 66.6140 | 7115 | 107 | 7115 | 69 | 20 | 28.9855 | |
| jmaeng-gatk | INDEL | I1_5 | map_l100_m1_e0 | homalt | 99.3263 | 99.6139 | 99.0403 | 80.7962 | 516 | 2 | 516 | 5 | 4 | 80.0000 | |
| gduggal-snapvard | SNP | * | HG002complexvar | * | 97.8941 | 96.7741 | 99.0404 | 21.0357 | 730048 | 24336 | 708362 | 6863 | 2537 | 36.9663 | |
| astatham-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 98.8693 | 98.6987 | 99.0405 | 76.6032 | 2427 | 32 | 2374 | 23 | 15 | 65.2174 | |
| gduggal-snapvard | INDEL | I1_5 | segdup | homalt | 93.4028 | 88.3721 | 99.0408 | 89.7341 | 418 | 55 | 413 | 4 | 4 | 100.0000 | |
| cchapple-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 99.4783 | 99.9198 | 99.0408 | 63.4745 | 2492 | 2 | 2478 | 24 | 2 | 8.3333 | |
| hfeng-pmm3 | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_11to50 | * | 97.5311 | 96.0668 | 99.0408 | 42.6732 | 9086 | 372 | 9086 | 88 | 81 | 92.0455 | |
| hfeng-pmm3 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 97.4936 | 95.9940 | 99.0408 | 57.8182 | 41599 | 1736 | 41405 | 401 | 351 | 87.5312 | |
| ckim-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 98.8899 | 98.7393 | 99.0409 | 76.8376 | 2428 | 31 | 2375 | 23 | 14 | 60.8696 | |
| egarrison-hhga | INDEL | * | map_l125_m1_e0 | homalt | 98.9056 | 98.7705 | 99.0411 | 85.3443 | 723 | 9 | 723 | 7 | 4 | 57.1429 | |
| ltrigg-rtg1 | INDEL | I6_15 | * | homalt | 98.7666 | 98.4933 | 99.0414 | 43.6510 | 6145 | 94 | 6096 | 59 | 52 | 88.1356 | |
| ndellapenna-hhga | INDEL | I1_5 | map_l150_m2_e1 | het | 98.4127 | 97.7918 | 99.0415 | 90.2735 | 310 | 7 | 310 | 3 | 0 | 0.0000 | |
| ckim-dragen | SNP | tv | map_l250_m2_e0 | homalt | 99.1471 | 99.2529 | 99.0415 | 84.5432 | 930 | 7 | 930 | 9 | 7 | 77.7778 | |
| astatham-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 97.7240 | 96.4410 | 99.0416 | 63.3898 | 6097 | 225 | 6097 | 59 | 50 | 84.7458 | |
| astatham-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 97.7240 | 96.4410 | 99.0416 | 63.3898 | 6097 | 225 | 6097 | 59 | 50 | 84.7458 | |
| ckim-gatk | INDEL | I1_5 | map_l100_m1_e0 | homalt | 99.4231 | 99.8069 | 99.0421 | 81.1416 | 517 | 1 | 517 | 5 | 4 | 80.0000 | |
| dgrover-gatk | INDEL | I1_5 | map_l100_m1_e0 | homalt | 99.4231 | 99.8069 | 99.0421 | 80.9489 | 517 | 1 | 517 | 5 | 4 | 80.0000 | |
| bgallagher-sentieon | SNP | ti | map_l150_m2_e0 | * | 99.1869 | 99.3321 | 99.0422 | 77.0287 | 20375 | 137 | 20371 | 197 | 37 | 18.7817 | |
| bgallagher-sentieon | SNP | ti | map_l150_m2_e1 | * | 99.1904 | 99.3389 | 99.0424 | 77.0978 | 20586 | 137 | 20582 | 199 | 37 | 18.5930 | |
| dgrover-gatk | INDEL | * | map_l125_m1_e0 | homalt | 98.9747 | 98.9071 | 99.0424 | 86.2723 | 724 | 8 | 724 | 7 | 4 | 57.1429 | |
| hfeng-pmm1 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 98.9071 | 98.7722 | 99.0424 | 71.9709 | 724 | 9 | 724 | 7 | 5 | 71.4286 | |
| rpoplin-dv42 | INDEL | * | map_l125_m1_e0 | homalt | 98.9747 | 98.9071 | 99.0424 | 85.2054 | 724 | 8 | 724 | 7 | 6 | 85.7143 | |
| gduggal-bwavard | INDEL | * | map_l125_m2_e1 | homalt | 96.3491 | 93.7984 | 99.0424 | 81.2275 | 726 | 48 | 724 | 7 | 4 | 57.1429 | |
| mlin-fermikit | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 98.9023 | 98.7622 | 99.0427 | 58.2117 | 3830 | 48 | 3828 | 37 | 32 | 86.4865 | |
| ndellapenna-hhga | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 62.6589 | 45.8248 | 99.0431 | 30.1003 | 225 | 266 | 207 | 2 | 1 | 50.0000 | |
| raldana-dualsentieon | INDEL | I1_5 | map_l100_m0_e0 | homalt | 99.2806 | 99.5192 | 99.0431 | 78.4758 | 207 | 1 | 207 | 2 | 1 | 50.0000 | |
| bgallagher-sentieon | INDEL | D1_5 | map_siren | * | 99.2660 | 99.4899 | 99.0431 | 81.6382 | 3511 | 18 | 3519 | 34 | 6 | 17.6471 | |
| ltrigg-rtg2 | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 98.1242 | 97.2222 | 99.0431 | 59.4175 | 210 | 6 | 207 | 2 | 1 | 50.0000 | |
| gduggal-bwavard | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 98.5575 | 98.0766 | 99.0431 | 61.4154 | 6884 | 135 | 6831 | 66 | 45 | 68.1818 | |
| anovak-vg | SNP | ti | func_cds | het | 98.3229 | 97.6129 | 99.0434 | 32.3272 | 8301 | 203 | 8283 | 80 | 49 | 61.2500 | |
| bgallagher-sentieon | INDEL | I1_5 | map_l100_m1_e0 | homalt | 99.5197 | 100.0000 | 99.0440 | 80.3679 | 518 | 0 | 518 | 5 | 4 | 80.0000 | |
| astatham-gatk | INDEL | I1_5 | map_l100_m1_e0 | homalt | 99.5197 | 100.0000 | 99.0440 | 80.6440 | 518 | 0 | 518 | 5 | 4 | 80.0000 | |
| hfeng-pmm2 | INDEL | I1_5 | map_l100_m1_e0 | homalt | 99.5197 | 100.0000 | 99.0440 | 79.1965 | 518 | 0 | 518 | 5 | 4 | 80.0000 | |
| hfeng-pmm3 | INDEL | I1_5 | map_l100_m1_e0 | homalt | 99.5197 | 100.0000 | 99.0440 | 78.7398 | 518 | 0 | 518 | 5 | 3 | 60.0000 | |
| jli-custom | SNP | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 99.4050 | 99.7685 | 99.0441 | 61.4043 | 35337 | 82 | 35333 | 341 | 20 | 5.8651 | |
| gduggal-bwaplat | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | * | 88.3800 | 79.7888 | 99.0444 | 59.7268 | 14508 | 3675 | 14511 | 140 | 39 | 27.8571 | |
| egarrison-hhga | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 96.7392 | 94.5387 | 99.0446 | 39.1669 | 5574 | 322 | 5598 | 54 | 50 | 92.5926 | |
| egarrison-hhga | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 96.7392 | 94.5387 | 99.0446 | 39.1669 | 5574 | 322 | 5598 | 54 | 50 | 92.5926 | |