PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
61701-61750 / 86044 show all | |||||||||||||||
| rpoplin-dv42 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 99.4057 | 99.7831 | 99.0312 | 77.4842 | 920 | 2 | 920 | 9 | 6 | 66.6667 | |
| gduggal-bwaplat | INDEL | D1_5 | map_l150_m1_e0 | * | 72.3894 | 57.0432 | 99.0315 | 95.5984 | 409 | 308 | 409 | 4 | 1 | 25.0000 | |
| dgrover-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 97.5138 | 96.0416 | 99.0318 | 51.5497 | 2863 | 118 | 2864 | 28 | 23 | 82.1429 | |
| cchapple-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 97.3852 | 95.7925 | 99.0319 | 61.6504 | 6056 | 266 | 6342 | 62 | 53 | 85.4839 | |
| cchapple-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 97.3852 | 95.7925 | 99.0319 | 61.6504 | 6056 | 266 | 6342 | 62 | 53 | 85.4839 | |
| ltrigg-rtg1 | INDEL | * | map_l150_m2_e0 | * | 96.6549 | 94.3892 | 99.0320 | 86.0395 | 1329 | 79 | 1330 | 13 | 3 | 23.0769 | |
| jlack-gatk | SNP | * | HG002complexvar | hetalt | 99.0323 | 99.0323 | 99.0323 | 39.5712 | 307 | 3 | 307 | 3 | 3 | 100.0000 | |
| jlack-gatk | SNP | tv | HG002complexvar | hetalt | 99.0323 | 99.0323 | 99.0323 | 39.5712 | 307 | 3 | 307 | 3 | 3 | 100.0000 | |
| gduggal-bwavard | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 90.4018 | 83.1551 | 99.0323 | 45.3263 | 311 | 63 | 307 | 3 | 3 | 100.0000 | |
| ndellapenna-hhga | INDEL | I1_5 | map_l125_m1_e0 | * | 98.8533 | 98.6747 | 99.0326 | 85.4529 | 819 | 11 | 819 | 8 | 1 | 12.5000 | |
| hfeng-pmm1 | SNP | * | map_l250_m2_e0 | * | 98.8758 | 98.7191 | 99.0331 | 88.4730 | 7784 | 101 | 7784 | 76 | 17 | 22.3684 | |
| gduggal-bwavard | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 49.8117 | 33.2739 | 99.0333 | 46.0603 | 933 | 1871 | 922 | 9 | 8 | 88.8889 | |
| jli-custom | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 99.4474 | 99.8648 | 99.0334 | 44.0841 | 10343 | 14 | 10348 | 101 | 98 | 97.0297 | |
| ckim-isaac | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 96.6131 | 94.3079 | 99.0337 | 49.0411 | 5832 | 352 | 5842 | 57 | 26 | 45.6140 | |
| ckim-isaac | INDEL | * | func_cds | het | 97.8678 | 96.7290 | 99.0338 | 42.5000 | 207 | 7 | 205 | 2 | 1 | 50.0000 | |
| ckim-isaac | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 98.6542 | 98.2774 | 99.0338 | 56.4448 | 16146 | 283 | 16093 | 157 | 70 | 44.5860 | |
| ckim-dragen | INDEL | D6_15 | * | het | 99.2490 | 99.4651 | 99.0338 | 63.3339 | 11530 | 62 | 11480 | 112 | 67 | 59.8214 | |
| hfeng-pmm3 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 97.0766 | 95.1952 | 99.0338 | 86.4144 | 634 | 32 | 615 | 6 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 97.0766 | 95.1952 | 99.0338 | 86.4144 | 634 | 32 | 615 | 6 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 62.3929 | 45.5428 | 99.0338 | 45.1898 | 751 | 898 | 615 | 6 | 5 | 83.3333 | |
| ckim-vqsr | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 97.3373 | 95.6976 | 99.0342 | 63.1411 | 6050 | 272 | 6050 | 59 | 49 | 83.0508 | |
| ckim-vqsr | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 97.3373 | 95.6976 | 99.0342 | 63.1411 | 6050 | 272 | 6050 | 59 | 49 | 83.0508 | |
| astatham-gatk | INDEL | I1_5 | map_l100_m2_e0 | het | 94.3221 | 90.0378 | 99.0345 | 86.8636 | 714 | 79 | 718 | 7 | 0 | 0.0000 | |
| jli-custom | INDEL | I1_5 | map_l150_m2_e0 | * | 98.8426 | 98.6513 | 99.0347 | 89.1016 | 512 | 7 | 513 | 5 | 2 | 40.0000 | |
| asubramanian-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.2985 | 99.5634 | 99.0351 | 56.4261 | 6157 | 27 | 6158 | 60 | 1 | 1.6667 | |
| rpoplin-dv42 | SNP | tv | map_l150_m1_e0 | * | 98.9126 | 98.7903 | 99.0352 | 73.1204 | 10780 | 132 | 10778 | 105 | 61 | 58.0952 | |
| gduggal-bwaplat | SNP | * | map_l150_m0_e0 | het | 60.8863 | 43.9547 | 99.0352 | 95.3638 | 3490 | 4450 | 3490 | 34 | 14 | 41.1765 | |
| hfeng-pmm3 | INDEL | I6_15 | * | * | 97.8954 | 96.7812 | 99.0356 | 49.5509 | 24024 | 799 | 24029 | 234 | 222 | 94.8718 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 94.7294 | 90.7820 | 99.0357 | 41.6612 | 1753 | 178 | 1746 | 17 | 17 | 100.0000 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 94.7294 | 90.7820 | 99.0357 | 41.6612 | 1753 | 178 | 1746 | 17 | 17 | 100.0000 | |
| ltrigg-rtg1 | INDEL | I6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 98.2792 | 97.5341 | 99.0358 | 68.7742 | 1503 | 38 | 1438 | 14 | 3 | 21.4286 | |
| hfeng-pmm3 | INDEL | I1_5 | map_l125_m1_e0 | * | 98.9155 | 98.7952 | 99.0361 | 84.0996 | 820 | 10 | 822 | 8 | 2 | 25.0000 | |
| dgrover-gatk | SNP | ti | map_l125_m0_e0 | * | 99.0401 | 99.0440 | 99.0361 | 76.9678 | 12640 | 122 | 12638 | 123 | 30 | 24.3902 | |
| ckim-dragen | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 98.3668 | 97.7064 | 99.0361 | 85.6897 | 426 | 10 | 411 | 4 | 1 | 25.0000 | |
| ltrigg-rtg2 | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | het | 98.7792 | 98.5236 | 99.0362 | 55.6925 | 10944 | 164 | 10892 | 106 | 23 | 21.6981 | |
| egarrison-hhga | INDEL | I1_5 | map_l100_m1_e0 | homalt | 99.1321 | 99.2278 | 99.0366 | 81.5237 | 514 | 4 | 514 | 5 | 2 | 40.0000 | |
| raldana-dualsentieon | INDEL | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 99.4822 | 99.9317 | 99.0367 | 73.5845 | 30740 | 21 | 30740 | 299 | 294 | 98.3278 | |
| gduggal-bwaplat | SNP | * | map_l250_m0_e0 | * | 44.7426 | 28.8993 | 99.0369 | 98.7610 | 617 | 1518 | 617 | 6 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | I1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 97.9893 | 96.9635 | 99.0370 | 71.9042 | 15104 | 473 | 15118 | 147 | 133 | 90.4762 | |
| hfeng-pmm2 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 96.5660 | 94.2153 | 99.0370 | 52.3174 | 3290 | 202 | 3291 | 32 | 26 | 81.2500 | |
| raldana-dualsentieon | INDEL | * | map_l125_m1_e0 | homalt | 98.6977 | 98.3607 | 99.0371 | 84.0640 | 720 | 12 | 720 | 7 | 3 | 42.8571 | |
| asubramanian-gatk | INDEL | D1_5 | * | hetalt | 96.4051 | 93.9092 | 99.0373 | 64.2371 | 9621 | 624 | 9670 | 94 | 88 | 93.6170 | |
| hfeng-pmm1 | SNP | ti | map_l250_m1_e0 | * | 98.9508 | 98.8644 | 99.0374 | 88.1947 | 4527 | 52 | 4527 | 44 | 10 | 22.7273 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | * | hetalt | 94.7356 | 90.7915 | 99.0379 | 41.7792 | 1755 | 178 | 1750 | 17 | 17 | 100.0000 | |
| jmaeng-gatk | SNP | * | func_cds | * | 99.4513 | 99.8678 | 99.0382 | 31.9360 | 18126 | 24 | 18123 | 176 | 1 | 0.5682 | |
| ltrigg-rtg1 | INDEL | I6_15 | map_l100_m2_e0 | * | 95.5192 | 92.2414 | 99.0385 | 81.8815 | 107 | 9 | 103 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 88.4082 | 79.8387 | 99.0385 | 99.9179 | 99 | 25 | 103 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | INDEL | * | map_l250_m1_e0 | homalt | 96.7136 | 94.4954 | 99.0385 | 93.9850 | 103 | 6 | 103 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | INDEL | D1_5 | map_l100_m2_e1 | homalt | 99.3569 | 99.6774 | 99.0385 | 83.3511 | 618 | 2 | 618 | 6 | 5 | 83.3333 | |
| egarrison-hhga | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 98.6867 | 98.3374 | 99.0385 | 67.1791 | 3194 | 54 | 3193 | 31 | 11 | 35.4839 | |