PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
60251-60300 / 86044 show all | |||||||||||||||
| ltrigg-rtg2 | INDEL | I1_5 | map_l100_m1_e0 | het | 97.5190 | 96.2677 | 98.8032 | 75.9360 | 748 | 29 | 743 | 9 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 97.1389 | 95.5295 | 98.8034 | 63.4805 | 13142 | 615 | 13129 | 159 | 34 | 21.3836 | |
| ltrigg-rtg1 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 97.1389 | 95.5295 | 98.8034 | 63.4805 | 13142 | 615 | 13129 | 159 | 34 | 21.3836 | |
| qzeng-custom | SNP | tv | map_l150_m2_e1 | homalt | 82.0801 | 70.1984 | 98.8034 | 73.9699 | 2902 | 1232 | 2890 | 35 | 35 | 100.0000 | |
| hfeng-pmm1 | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 94.8440 | 91.1898 | 98.8034 | 58.6110 | 3633 | 351 | 3633 | 44 | 35 | 79.5455 | |
| ndellapenna-hhga | INDEL | * | map_l100_m2_e0 | homalt | 98.5288 | 98.2554 | 98.8038 | 83.0311 | 1239 | 22 | 1239 | 15 | 10 | 66.6667 | |
| qzeng-custom | SNP | tv | map_l150_m1_e0 | homalt | 81.4702 | 69.3107 | 98.8039 | 71.2754 | 2735 | 1211 | 2726 | 33 | 33 | 100.0000 | |
| gduggal-bwafb | SNP | * | map_l125_m2_e0 | * | 98.8404 | 98.8764 | 98.8045 | 74.2723 | 46198 | 525 | 46198 | 559 | 136 | 24.3292 | |
| rpoplin-dv42 | INDEL | I1_5 | map_l150_m1_e0 | * | 98.2131 | 97.6285 | 98.8048 | 88.8071 | 494 | 12 | 496 | 6 | 2 | 33.3333 | |
| mlin-fermikit | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 97.9660 | 97.1407 | 98.8054 | 65.3168 | 2582 | 76 | 2564 | 31 | 30 | 96.7742 | |
| ckim-gatk | INDEL | D16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 99.2908 | 99.7807 | 98.8056 | 70.5939 | 910 | 2 | 910 | 11 | 8 | 72.7273 | |
| ckim-vqsr | INDEL | D16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 99.2908 | 99.7807 | 98.8056 | 70.5939 | 910 | 2 | 910 | 11 | 8 | 72.7273 | |
| astatham-gatk | INDEL | D16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 99.2908 | 99.7807 | 98.8056 | 70.4524 | 910 | 2 | 910 | 11 | 8 | 72.7273 | |
| egarrison-hhga | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 98.4855 | 98.1673 | 98.8057 | 79.9095 | 6535 | 122 | 6536 | 79 | 33 | 41.7722 | |
| astatham-gatk | SNP | * | map_l250_m1_e0 | het | 89.4949 | 81.7876 | 98.8059 | 91.8773 | 3889 | 866 | 3889 | 47 | 12 | 25.5319 | |
| gduggal-bwafb | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 84.0574 | 73.1400 | 98.8060 | 22.4537 | 580 | 213 | 331 | 4 | 4 | 100.0000 | |
| cchapple-custom | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 95.8425 | 93.0514 | 98.8062 | 60.2346 | 616 | 46 | 1407 | 17 | 12 | 70.5882 | |
| qzeng-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 99.2117 | 99.6203 | 98.8065 | 58.3355 | 1574 | 6 | 1573 | 19 | 1 | 5.2632 | |
| asubramanian-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 96.5054 | 94.3089 | 98.8067 | 30.3644 | 10473 | 632 | 11178 | 135 | 126 | 93.3333 | |
| ndellapenna-hhga | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | * | 97.1160 | 95.4815 | 98.8074 | 51.9618 | 5473 | 259 | 5468 | 66 | 42 | 63.6364 | |
| ltrigg-rtg2 | SNP | ti | * | hetalt | 99.1449 | 99.4845 | 98.8075 | 41.3000 | 579 | 3 | 580 | 7 | 7 | 100.0000 | |
| ckim-isaac | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 96.7398 | 94.7570 | 98.8075 | 51.0833 | 1735 | 96 | 1740 | 21 | 1 | 4.7619 | |
| ckim-vqsr | INDEL | I1_5 | map_l100_m2_e0 | * | 97.7479 | 96.7105 | 98.8077 | 88.3990 | 1323 | 45 | 1326 | 16 | 4 | 25.0000 | |
| ltrigg-rtg2 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 98.2673 | 97.7324 | 98.8081 | 84.5914 | 1724 | 40 | 1658 | 20 | 1 | 5.0000 | |
| bgallagher-sentieon | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 97.2443 | 95.7292 | 98.8082 | 63.2331 | 6052 | 270 | 6052 | 73 | 63 | 86.3014 | |
| bgallagher-sentieon | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 97.2443 | 95.7292 | 98.8082 | 63.2331 | 6052 | 270 | 6052 | 73 | 63 | 86.3014 | |
| hfeng-pmm3 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 96.9360 | 95.1324 | 98.8093 | 46.5673 | 13114 | 671 | 13112 | 158 | 151 | 95.5696 | |
| bgallagher-sentieon | SNP | ti | tech_badpromoters | * | 98.2249 | 97.6471 | 98.8095 | 45.0980 | 83 | 2 | 83 | 1 | 1 | 100.0000 | |
| cchapple-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 97.9358 | 97.0774 | 98.8095 | 45.2536 | 31057 | 935 | 41417 | 499 | 447 | 89.5792 | |
| astatham-gatk | SNP | ti | tech_badpromoters | * | 98.2249 | 97.6471 | 98.8095 | 45.0980 | 83 | 2 | 83 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | INDEL | D6_15 | HG002complexvar | homalt | 99.0619 | 99.3157 | 98.8095 | 62.8201 | 1161 | 8 | 1162 | 14 | 14 | 100.0000 | |
| ckim-dragen | INDEL | D1_5 | map_l150_m0_e0 | homalt | 98.2249 | 97.6471 | 98.8095 | 90.0238 | 83 | 2 | 83 | 1 | 1 | 100.0000 | |
| hfeng-pmm1 | INDEL | D1_5 | map_l125_m0_e0 | het | 97.3547 | 95.9420 | 98.8095 | 83.7916 | 331 | 14 | 332 | 4 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | * | map_l250_m2_e0 | homalt | 81.0457 | 68.6957 | 98.8095 | 97.2495 | 79 | 36 | 83 | 1 | 0 | 0.0000 | |
| gduggal-snapvard | SNP | * | map_l250_m0_e0 | homalt | 95.9878 | 93.3227 | 98.8095 | 92.9615 | 587 | 42 | 581 | 7 | 6 | 85.7143 | |
| ndellapenna-hhga | INDEL | I1_5 | map_l150_m1_e0 | * | 98.6139 | 98.4190 | 98.8095 | 88.8938 | 498 | 8 | 498 | 6 | 1 | 16.6667 | |
| raldana-dualsentieon | SNP | ti | tech_badpromoters | * | 98.2249 | 97.6471 | 98.8095 | 42.8571 | 83 | 2 | 83 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | INDEL | D1_5 | map_l100_m2_e1 | het | 98.3776 | 97.9495 | 98.8095 | 82.0257 | 1242 | 26 | 1245 | 15 | 3 | 20.0000 | |
| rpoplin-dv42 | INDEL | D1_5 | map_l250_m1_e0 | * | 97.9351 | 97.0760 | 98.8095 | 95.1431 | 166 | 5 | 166 | 2 | 1 | 50.0000 | |
| rpoplin-dv42 | INDEL | D6_15 | map_l150_m2_e1 | * | 98.2249 | 97.6471 | 98.8095 | 91.9617 | 83 | 2 | 83 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | INDEL | I1_5 | map_l150_m0_e0 | * | 96.8082 | 94.8864 | 98.8095 | 85.6041 | 167 | 9 | 166 | 2 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | D1_5 | map_l150_m0_e0 | homalt | 98.2249 | 97.6471 | 98.8095 | 90.4328 | 83 | 2 | 83 | 1 | 1 | 100.0000 | |
| jmaeng-gatk | SNP | ti | tech_badpromoters | * | 98.2249 | 97.6471 | 98.8095 | 45.4545 | 83 | 2 | 83 | 1 | 1 | 100.0000 | |
| ckim-isaac | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 96.1516 | 93.6330 | 98.8095 | 54.5946 | 250 | 17 | 249 | 3 | 1 | 33.3333 | |
| dgrover-gatk | INDEL | D1_5 | map_l150_m0_e0 | homalt | 98.2249 | 97.6471 | 98.8095 | 90.8795 | 83 | 2 | 83 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | SNP | tv | map_l100_m2_e1 | hetalt | 99.4012 | 100.0000 | 98.8095 | 70.6294 | 43 | 0 | 166 | 2 | 1 | 50.0000 | |
| gduggal-bwafb | INDEL | I1_5 | map_l150_m0_e0 | * | 96.8082 | 94.8864 | 98.8095 | 91.6584 | 167 | 9 | 166 | 2 | 1 | 50.0000 | |
| gduggal-snapvard | SNP | * | * | het | 98.8907 | 98.9717 | 98.8098 | 27.4520 | 1854334 | 19266 | 1842523 | 22194 | 3216 | 14.4904 | |
| astatham-gatk | INDEL | * | map_siren | * | 97.4708 | 96.1673 | 98.8100 | 83.5327 | 7126 | 284 | 7141 | 86 | 20 | 23.2558 | |
| mlin-fermikit | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 98.7368 | 98.6632 | 98.8105 | 55.8582 | 11145 | 151 | 11131 | 134 | 133 | 99.2537 | |