PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
58551-58600 / 86044 show all | |||||||||||||||
| ckim-dragen | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | * | 82.2785 | 70.6522 | 98.4848 | 62.0690 | 65 | 27 | 65 | 1 | 1 | 100.0000 | |
| ckim-dragen | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 80.9217 | 68.6747 | 98.4848 | 30.5263 | 57 | 26 | 65 | 1 | 1 | 100.0000 | |
| cchapple-custom | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | het | 92.8800 | 87.8788 | 98.4848 | 94.0000 | 58 | 8 | 65 | 1 | 1 | 100.0000 | |
| cchapple-custom | INDEL | I1_5 | map_l150_m0_e0 | homalt | 97.7444 | 97.0149 | 98.4848 | 88.2562 | 65 | 2 | 65 | 1 | 1 | 100.0000 | |
| hfeng-pmm1 | INDEL | D1_5 | map_l150_m0_e0 | het | 97.2469 | 96.0396 | 98.4848 | 87.4206 | 194 | 8 | 195 | 3 | 0 | 0.0000 | |
| egarrison-hhga | INDEL | D1_5 | map_siren | hetalt | 87.4083 | 78.5714 | 98.4848 | 91.1409 | 66 | 18 | 65 | 1 | 1 | 100.0000 | |
| ckim-vqsr | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 97.0149 | 95.5882 | 98.4848 | 97.0014 | 65 | 3 | 65 | 1 | 0 | 0.0000 | |
| ckim-isaac | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 92.8571 | 87.8378 | 98.4848 | 78.0000 | 65 | 9 | 65 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | * | 91.8670 | 86.0825 | 98.4848 | 65.2997 | 334 | 54 | 325 | 5 | 4 | 80.0000 | |
| ltrigg-rtg1 | INDEL | I1_5 | map_l150_m0_e0 | homalt | 99.2366 | 100.0000 | 98.4848 | 88.7564 | 67 | 0 | 65 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | I1_5 | map_l150_m1_e0 | homalt | 99.2366 | 100.0000 | 98.4848 | 86.5398 | 198 | 0 | 195 | 3 | 1 | 33.3333 | |
| jli-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 99.1609 | 99.8464 | 98.4848 | 39.5973 | 1950 | 3 | 1950 | 30 | 30 | 100.0000 | |
| ckim-isaac | INDEL | D6_15 | * | hetalt | 90.6237 | 83.9246 | 98.4851 | 33.2460 | 6860 | 1314 | 7281 | 112 | 99 | 88.3929 | |
| gduggal-bwaplat | SNP | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 89.3508 | 81.7668 | 98.4855 | 74.7866 | 28961 | 6458 | 29002 | 446 | 106 | 23.7668 | |
| raldana-dualsentieon | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | het | 98.5286 | 98.5711 | 98.4861 | 38.0204 | 4622 | 67 | 4619 | 71 | 0 | 0.0000 | |
| dgrover-gatk | SNP | tv | map_l150_m2_e1 | het | 98.8473 | 99.2107 | 98.4865 | 81.3098 | 7290 | 58 | 7288 | 112 | 20 | 17.8571 | |
| ciseli-custom | SNP | tv | func_cds | homalt | 99.1797 | 99.8826 | 98.4866 | 26.8313 | 1702 | 2 | 1692 | 26 | 9 | 34.6154 | |
| eyeh-varpipe | SNP | ti | map_l100_m1_e0 | het | 99.0514 | 99.6226 | 98.4868 | 69.7302 | 29829 | 113 | 29158 | 448 | 19 | 4.2411 | |
| anovak-vg | SNP | * | HG002complexvar | * | 97.6964 | 96.9184 | 98.4870 | 19.4533 | 731138 | 23247 | 712315 | 10943 | 8438 | 77.1087 | |
| jli-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 98.7625 | 99.0392 | 98.4873 | 71.5773 | 1237 | 12 | 1237 | 19 | 13 | 68.4211 | |
| jli-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 98.7625 | 99.0392 | 98.4873 | 71.5773 | 1237 | 12 | 1237 | 19 | 13 | 68.4211 | |
| gduggal-bwafb | INDEL | I1_5 | map_l100_m0_e0 | * | 97.3901 | 96.3168 | 98.4877 | 84.2137 | 523 | 20 | 521 | 8 | 2 | 25.0000 | |
| qzeng-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.1026 | 99.7251 | 98.4878 | 62.3729 | 6167 | 17 | 6122 | 94 | 6 | 6.3830 | |
| hfeng-pmm3 | INDEL | * | map_l125_m2_e0 | het | 98.2731 | 98.0590 | 98.4881 | 86.4620 | 1364 | 27 | 1368 | 21 | 3 | 14.2857 | |
| ckim-isaac | INDEL | D1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 93.3528 | 88.7263 | 98.4883 | 45.1727 | 8248 | 1048 | 8535 | 131 | 123 | 93.8931 | |
| ckim-dragen | INDEL | D16_PLUS | HG002complexvar | het | 98.4311 | 98.3740 | 98.4884 | 69.6006 | 1089 | 18 | 847 | 13 | 2 | 15.3846 | |
| ghariani-varprowl | INDEL | D1_5 | segdup | homalt | 94.4928 | 90.8078 | 98.4894 | 93.1837 | 326 | 33 | 326 | 5 | 4 | 80.0000 | |
| jpowers-varprowl | INDEL | D1_5 | segdup | homalt | 94.4928 | 90.8078 | 98.4894 | 93.0154 | 326 | 33 | 326 | 5 | 4 | 80.0000 | |
| ckim-vqsr | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 97.6846 | 96.8924 | 98.4899 | 76.8920 | 2089 | 67 | 2087 | 32 | 20 | 62.5000 | |
| gduggal-bwafb | INDEL | * | map_siren | homalt | 98.3408 | 98.1921 | 98.4900 | 81.3372 | 2607 | 48 | 2609 | 40 | 27 | 67.5000 | |
| ndellapenna-hhga | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 77.6408 | 64.0764 | 98.4903 | 40.8685 | 6712 | 3763 | 6263 | 96 | 86 | 89.5833 | |
| egarrison-hhga | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 65.1258 | 48.6464 | 98.4906 | 44.0338 | 575 | 607 | 522 | 8 | 6 | 75.0000 | |
| gduggal-snapvard | INDEL | I1_5 | map_l150_m2_e0 | homalt | 94.8894 | 91.5423 | 98.4906 | 83.3960 | 184 | 17 | 261 | 4 | 2 | 50.0000 | |
| jlack-gatk | INDEL | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 99.1165 | 99.7497 | 98.4914 | 72.1867 | 30684 | 77 | 30684 | 470 | 460 | 97.8723 | |
| rpoplin-dv42 | INDEL | I6_15 | HG002complexvar | * | 96.7965 | 95.1586 | 98.4917 | 56.6586 | 4560 | 232 | 4571 | 70 | 64 | 91.4286 | |
| ckim-isaac | INDEL | * | map_l150_m2_e0 | * | 74.8018 | 60.2983 | 98.4919 | 91.3653 | 849 | 559 | 849 | 13 | 5 | 38.4615 | |
| gduggal-bwafb | SNP | ti | map_l125_m1_e0 | het | 98.5889 | 98.6861 | 98.4920 | 74.2606 | 18026 | 240 | 18026 | 276 | 77 | 27.8986 | |
| ckim-dragen | INDEL | * | map_l100_m2_e0 | homalt | 98.5323 | 98.5726 | 98.4921 | 84.5872 | 1243 | 18 | 1241 | 19 | 10 | 52.6316 | |
| jmaeng-gatk | INDEL | D6_15 | HG002complexvar | * | 97.9225 | 97.3595 | 98.4921 | 58.5358 | 5162 | 140 | 5160 | 79 | 74 | 93.6709 | |
| jmaeng-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 98.9899 | 99.4924 | 98.4925 | 60.5941 | 196 | 1 | 196 | 3 | 3 | 100.0000 | |
| jmaeng-gatk | INDEL | I1_5 | map_l150_m1_e0 | homalt | 98.7406 | 98.9899 | 98.4925 | 87.1030 | 196 | 2 | 196 | 3 | 2 | 66.6667 | |
| ltrigg-rtg2 | INDEL | * | map_l250_m2_e0 | het | 94.8292 | 91.4286 | 98.4925 | 92.1437 | 192 | 18 | 196 | 3 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 98.7380 | 98.9848 | 98.4925 | 60.4374 | 195 | 2 | 196 | 3 | 2 | 66.6667 | |
| hfeng-pmm2 | SNP | ti | map_l250_m2_e0 | * | 98.8259 | 99.1613 | 98.4927 | 89.9448 | 4966 | 42 | 4966 | 76 | 9 | 11.8421 | |
| qzeng-custom | SNP | * | segdup | * | 98.6778 | 98.8634 | 98.4928 | 92.2719 | 27748 | 319 | 27512 | 421 | 68 | 16.1520 | |
| raldana-dualsentieon | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 97.3211 | 96.1768 | 98.4930 | 60.0607 | 8075 | 321 | 8039 | 123 | 117 | 95.1220 | |
| jli-custom | INDEL | D1_5 | map_l100_m2_e0 | het | 98.6492 | 98.8057 | 98.4933 | 82.5249 | 1241 | 15 | 1242 | 19 | 5 | 26.3158 | |
| ltrigg-rtg2 | INDEL | I16_PLUS | * | * | 92.6024 | 87.3765 | 98.4933 | 47.8680 | 5572 | 805 | 5491 | 84 | 71 | 84.5238 | |
| ltrigg-rtg2 | INDEL | I1_5 | segdup | het | 98.6887 | 98.8848 | 98.4934 | 93.5006 | 532 | 6 | 523 | 8 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | D1_5 | map_siren | * | 98.3828 | 98.2715 | 98.4943 | 79.4152 | 3468 | 61 | 3467 | 53 | 28 | 52.8302 | |