PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
56701-56750 / 86044 show all | |||||||||||||||
| jpowers-varprowl | SNP | ti | map_l100_m1_e0 | het | 97.5455 | 97.0209 | 98.0758 | 71.2709 | 29050 | 892 | 29052 | 570 | 164 | 28.7719 | |
| jpowers-varprowl | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 90.3431 | 83.7398 | 98.0769 | 74.6548 | 309 | 60 | 306 | 6 | 5 | 83.3333 | |
| ltrigg-rtg2 | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 0.0000 | 0.0000 | 98.0769 | 95.2899 | 0 | 0 | 51 | 1 | 0 | 0.0000 | |
| anovak-vg | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 98.1478 | 98.2188 | 98.0769 | 60.6061 | 772 | 14 | 765 | 15 | 10 | 66.6667 | |
| asubramanian-gatk | INDEL | D1_5 | map_l250_m2_e0 | homalt | 91.0714 | 85.0000 | 98.0769 | 95.4664 | 51 | 9 | 51 | 1 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | D1_5 | map_l250_m2_e1 | homalt | 91.0714 | 85.0000 | 98.0769 | 95.5932 | 51 | 9 | 51 | 1 | 0 | 0.0000 | |
| egarrison-hhga | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 98.0769 | 98.0769 | 98.0769 | 77.7778 | 51 | 1 | 51 | 1 | 1 | 100.0000 | |
| ckim-isaac | INDEL | D1_5 | map_l100_m2_e0 | het | 86.2638 | 76.9904 | 98.0769 | 84.9825 | 967 | 289 | 969 | 19 | 7 | 36.8421 | |
| ckim-isaac | INDEL | D1_5 | segdup | hetalt | 96.1154 | 94.2308 | 98.0769 | 93.2026 | 49 | 3 | 51 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 94.3571 | 90.9091 | 98.0769 | 60.0000 | 50 | 5 | 51 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 93.5780 | 89.4737 | 98.0769 | 99.4056 | 51 | 6 | 51 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | HG002complexvar | hetalt | 58.9170 | 42.1053 | 98.0769 | 57.6087 | 104 | 143 | 153 | 3 | 2 | 66.6667 | |
| ndellapenna-hhga | INDEL | D1_5 | map_l100_m2_e1 | * | 97.6961 | 97.3182 | 98.0769 | 82.8076 | 1887 | 52 | 1887 | 37 | 17 | 45.9459 | |
| ndellapenna-hhga | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 97.1059 | 96.1538 | 98.0769 | 54.3860 | 50 | 2 | 51 | 1 | 0 | 0.0000 | |
| gduggal-bwaplat | INDEL | D6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 87.1382 | 78.3947 | 98.0769 | 64.9494 | 2852 | 786 | 2856 | 56 | 50 | 89.2857 | |
| gduggal-bwaplat | INDEL | I6_15 | map_siren | * | 79.0667 | 66.2295 | 98.0769 | 90.4236 | 202 | 103 | 204 | 4 | 4 | 100.0000 | |
| gduggal-bwavard | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 24.8175 | 14.2061 | 98.0769 | 63.8889 | 51 | 308 | 51 | 1 | 1 | 100.0000 | |
| ghariani-varprowl | INDEL | I1_5 | map_l100_m2_e0 | homalt | 97.0504 | 96.0452 | 98.0769 | 77.1629 | 510 | 21 | 510 | 10 | 5 | 50.0000 | |
| jlack-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 94.3571 | 90.9091 | 98.0769 | 63.8889 | 50 | 5 | 51 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 94.3571 | 90.9091 | 98.0769 | 59.0551 | 50 | 5 | 51 | 1 | 1 | 100.0000 | |
| astatham-gatk | INDEL | * | map_l100_m1_e0 | * | 96.5907 | 95.1478 | 98.0780 | 85.9214 | 3412 | 174 | 3419 | 67 | 17 | 25.3731 | |
| ltrigg-rtg1 | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 96.2459 | 94.4805 | 98.0785 | 59.8187 | 1164 | 68 | 1174 | 23 | 10 | 43.4783 | |
| ndellapenna-hhga | SNP | * | HG002compoundhet | homalt | 98.7381 | 99.4064 | 98.0787 | 35.7852 | 10718 | 64 | 10720 | 210 | 197 | 93.8095 | |
| gduggal-bwafb | SNP | tv | segdup | * | 98.7191 | 99.3671 | 98.0796 | 93.0076 | 8478 | 54 | 8478 | 166 | 14 | 8.4337 | |
| ckim-dragen | SNP | ti | map_l100_m1_e0 | * | 98.6835 | 99.2948 | 98.0797 | 66.8879 | 47593 | 338 | 47601 | 932 | 106 | 11.3734 | |
| mlin-fermikit | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 96.0492 | 94.1010 | 98.0798 | 79.0164 | 3988 | 250 | 3984 | 78 | 11 | 14.1026 | |
| ltrigg-rtg2 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 98.4525 | 98.8280 | 98.0798 | 67.6014 | 30778 | 365 | 31005 | 607 | 33 | 5.4366 | |
| ltrigg-rtg2 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 98.4525 | 98.8280 | 98.0798 | 67.6014 | 30778 | 365 | 31005 | 607 | 33 | 5.4366 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 91.7092 | 86.1153 | 98.0803 | 52.6837 | 1135 | 183 | 1124 | 22 | 22 | 100.0000 | |
| ndellapenna-hhga | INDEL | * | map_l125_m2_e0 | * | 97.8100 | 97.5410 | 98.0804 | 98.3346 | 2142 | 54 | 2146 | 42 | 15 | 35.7143 | |
| gduggal-snapplat | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 94.2325 | 90.6751 | 98.0805 | 79.1908 | 1585 | 163 | 1584 | 31 | 13 | 41.9355 | |
| hfeng-pmm3 | INDEL | D1_5 | map_l150_m2_e0 | het | 98.5517 | 99.0272 | 98.0806 | 87.1263 | 509 | 5 | 511 | 10 | 2 | 20.0000 | |
| astatham-gatk | INDEL | * | map_l100_m2_e1 | * | 96.5544 | 95.0745 | 98.0811 | 86.7793 | 3571 | 185 | 3578 | 70 | 18 | 25.7143 | |
| dgrover-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_11to50 | * | 97.9622 | 97.8431 | 98.0816 | 45.4687 | 9254 | 204 | 9254 | 181 | 176 | 97.2376 | |
| dgrover-gatk | INDEL | D1_5 | map_l150_m2_e1 | * | 98.2053 | 98.3290 | 98.0818 | 90.2929 | 765 | 13 | 767 | 15 | 4 | 26.6667 | |
| dgrover-gatk | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 94.8084 | 91.7464 | 98.0818 | 67.8189 | 767 | 69 | 767 | 15 | 13 | 86.6667 | |
| mlin-fermikit | SNP | tv | map_l125_m0_e0 | het | 48.9678 | 32.6289 | 98.0822 | 65.3700 | 1436 | 2965 | 1432 | 28 | 0 | 0.0000 | |
| hfeng-pmm1 | SNP | * | map_l250_m0_e0 | * | 98.1512 | 98.2201 | 98.0823 | 92.9304 | 2097 | 38 | 2097 | 41 | 9 | 21.9512 | |
| asubramanian-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 96.5828 | 95.1281 | 98.0826 | 45.6725 | 5643 | 289 | 7622 | 149 | 142 | 95.3020 | |
| mlin-fermikit | SNP | * | map_l150_m1_e0 | het | 54.1179 | 37.3680 | 98.0827 | 65.3701 | 7218 | 12098 | 7213 | 141 | 5 | 3.5461 | |
| jmaeng-gatk | SNP | * | map_siren | het | 95.7096 | 93.4477 | 98.0837 | 71.4678 | 85029 | 5962 | 85015 | 1661 | 101 | 6.0807 | |
| ndellapenna-hhga | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 70.4512 | 54.9658 | 98.0843 | 26.8908 | 321 | 263 | 256 | 5 | 4 | 80.0000 | |
| jmaeng-gatk | INDEL | I1_5 | map_siren | * | 98.3096 | 98.5358 | 98.0845 | 83.5542 | 2961 | 44 | 2970 | 58 | 9 | 15.5172 | |
| anovak-vg | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 98.4369 | 98.7908 | 98.0854 | 58.8485 | 3840 | 47 | 3996 | 78 | 33 | 42.3077 | |
| bgallagher-sentieon | INDEL | D6_15 | * | het | 98.7535 | 99.4306 | 98.0855 | 62.6961 | 11526 | 66 | 11476 | 224 | 188 | 83.9286 | |
| ckim-isaac | INDEL | D1_5 | * | hetalt | 92.0397 | 86.6959 | 98.0855 | 45.9935 | 8882 | 1363 | 9222 | 180 | 168 | 93.3333 | |
| jlack-gatk | SNP | tv | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 98.9413 | 99.8121 | 98.0856 | 65.0500 | 27626 | 52 | 27616 | 539 | 26 | 4.8238 | |
| raldana-dualsentieon | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 96.8420 | 95.6294 | 98.0857 | 58.9442 | 41441 | 1894 | 41248 | 805 | 768 | 95.4037 | |
| ndellapenna-hhga | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | * | 97.9476 | 97.8095 | 98.0861 | 56.9959 | 1027 | 23 | 1025 | 20 | 9 | 45.0000 | |
| gduggal-snapvard | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 75.6451 | 61.5607 | 98.0861 | 70.4802 | 213 | 133 | 205 | 4 | 4 | 100.0000 | |