PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
56001-56050 / 86044 show all | |||||||||||||||
| raldana-dualsentieon | INDEL | D1_5 | map_l150_m2_e1 | het | 97.7008 | 97.5096 | 97.8927 | 87.5328 | 509 | 13 | 511 | 11 | 2 | 18.1818 | |
| gduggal-bwaplat | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 74.3814 | 59.9765 | 97.8927 | 91.3619 | 511 | 341 | 511 | 11 | 10 | 90.9091 | |
| dgrover-gatk | INDEL | D6_15 | * | homalt | 98.8732 | 99.8735 | 97.8928 | 55.5601 | 6318 | 8 | 6318 | 136 | 134 | 98.5294 | |
| eyeh-varpipe | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 54.5918 | 37.8497 | 97.8929 | 39.6624 | 2584 | 4243 | 2834 | 61 | 58 | 95.0820 | |
| gduggal-bwafb | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 91.4107 | 85.7327 | 97.8942 | 35.5826 | 3984 | 663 | 1813 | 39 | 39 | 100.0000 | |
| gduggal-bwafb | INDEL | D1_5 | map_l125_m2_e0 | * | 97.8099 | 97.7253 | 97.8947 | 86.9699 | 1117 | 26 | 1116 | 24 | 2 | 8.3333 | |
| gduggal-bwafb | INDEL | I1_5 | map_l150_m1_e0 | het | 95.1960 | 92.6421 | 97.8947 | 88.6091 | 277 | 22 | 279 | 6 | 1 | 16.6667 | |
| ckim-vqsr | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 93.9394 | 90.2913 | 97.8947 | 88.4988 | 186 | 20 | 186 | 4 | 2 | 50.0000 | |
| raldana-dualsentieon | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 91.9881 | 86.7537 | 97.8947 | 61.8780 | 465 | 71 | 465 | 10 | 9 | 90.0000 | |
| ndellapenna-hhga | INDEL | D1_5 | map_l125_m2_e0 | het | 97.6378 | 97.3822 | 97.8947 | 85.3565 | 744 | 20 | 744 | 16 | 4 | 25.0000 | |
| ltrigg-rtg1 | INDEL | I6_15 | map_siren | * | 95.4449 | 93.1148 | 97.8947 | 78.4743 | 284 | 21 | 279 | 6 | 4 | 66.6667 | |
| ltrigg-rtg1 | INDEL | C6_15 | * | * | 98.9362 | 100.0000 | 97.8947 | 93.9625 | 7 | 0 | 372 | 8 | 3 | 37.5000 | |
| jmaeng-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | * | 96.8750 | 95.8763 | 97.8947 | 75.5627 | 372 | 16 | 372 | 8 | 4 | 50.0000 | |
| dgrover-gatk | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | * | 98.8905 | 99.9061 | 97.8953 | 39.6283 | 7445 | 7 | 7442 | 160 | 3 | 1.8750 | |
| ndellapenna-hhga | INDEL | * | map_l150_m2_e0 | het | 97.4002 | 96.9095 | 97.8959 | 89.3401 | 878 | 28 | 884 | 19 | 5 | 26.3158 | |
| ckim-gatk | SNP | ti | map_l100_m2_e1 | het | 92.9104 | 88.4076 | 97.8964 | 81.4552 | 27371 | 3589 | 27364 | 588 | 62 | 10.5442 | |
| eyeh-varpipe | SNP | tv | map_l250_m2_e1 | * | 98.7186 | 99.5542 | 97.8969 | 90.7430 | 2903 | 13 | 2886 | 62 | 6 | 9.6774 | |
| ndellapenna-hhga | INDEL | I6_15 | * | het | 97.5570 | 97.2192 | 97.8973 | 54.2636 | 9754 | 279 | 9777 | 210 | 127 | 60.4762 | |
| cchapple-custom | INDEL | D1_5 | HG002compoundhet | * | 96.3466 | 94.8427 | 97.8989 | 66.1292 | 11604 | 631 | 12627 | 271 | 261 | 96.3100 | |
| jmaeng-gatk | INDEL | D6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 98.8981 | 99.9175 | 97.8993 | 62.0929 | 3635 | 3 | 3635 | 78 | 75 | 96.1538 | |
| bgallagher-sentieon | SNP | tv | map_l100_m0_e0 | het | 98.6394 | 99.3908 | 97.8993 | 74.3366 | 7178 | 44 | 7177 | 154 | 21 | 13.6364 | |
| hfeng-pmm2 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 96.6345 | 95.4020 | 97.8993 | 66.6779 | 3880 | 187 | 3868 | 83 | 65 | 78.3133 | |
| raldana-dualsentieon | SNP | * | map_l150_m0_e0 | het | 97.9798 | 98.0605 | 97.8994 | 80.7841 | 7786 | 154 | 7783 | 167 | 2 | 1.1976 | |
| gduggal-bwafb | INDEL | D1_5 | map_l100_m0_e0 | * | 97.6164 | 97.3349 | 97.8996 | 85.1319 | 840 | 23 | 839 | 18 | 1 | 5.5556 | |
| hfeng-pmm3 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 97.5163 | 97.1354 | 97.9003 | 84.4426 | 373 | 11 | 373 | 8 | 2 | 25.0000 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | HG002compoundhet | het | 94.1181 | 90.6173 | 97.9003 | 50.1961 | 367 | 38 | 373 | 8 | 8 | 100.0000 | |
| mlin-fermikit | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 94.8405 | 91.9659 | 97.9006 | 68.3752 | 18006 | 1573 | 18000 | 386 | 15 | 3.8860 | |
| mlin-fermikit | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 94.8405 | 91.9659 | 97.9006 | 68.3752 | 18006 | 1573 | 18000 | 386 | 15 | 3.8860 | |
| ghariani-varprowl | INDEL | D1_5 | * | homalt | 93.4710 | 89.4248 | 97.9006 | 50.1151 | 43752 | 5174 | 43695 | 937 | 631 | 67.3426 | |
| gduggal-bwaplat | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | het | 82.0473 | 70.6121 | 97.9019 | 63.3528 | 3311 | 1378 | 3313 | 71 | 11 | 15.4930 | |
| gduggal-bwafb | INDEL | * | HG002compoundhet | het | 91.2904 | 85.5154 | 97.9020 | 36.8528 | 3501 | 593 | 30518 | 654 | 528 | 80.7339 | |
| eyeh-varpipe | SNP | ti | map_l250_m2_e1 | het | 98.5825 | 99.2725 | 97.9021 | 91.2682 | 3275 | 24 | 3220 | 69 | 4 | 5.7971 | |
| ltrigg-rtg2 | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 97.7655 | 97.6293 | 97.9021 | 61.5936 | 453 | 11 | 420 | 9 | 3 | 33.3333 | |
| jlack-gatk | INDEL | * | map_l125_m0_e0 | homalt | 98.2456 | 98.5915 | 97.9021 | 87.7673 | 280 | 4 | 280 | 6 | 4 | 66.6667 | |
| ckim-dragen | INDEL | I6_15 | map_siren | het | 97.9021 | 97.9021 | 97.9021 | 87.2093 | 140 | 3 | 140 | 3 | 1 | 33.3333 | |
| ndellapenna-hhga | INDEL | * | map_l125_m0_e0 | homalt | 98.2456 | 98.5915 | 97.9021 | 86.6480 | 280 | 4 | 280 | 6 | 4 | 66.6667 | |
| dgrover-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 97.6983 | 97.4954 | 97.9021 | 76.6822 | 2102 | 54 | 2100 | 45 | 20 | 44.4444 | |
| jlack-gatk | INDEL | I6_15 | * | het | 97.9846 | 98.0664 | 97.9029 | 60.0128 | 9839 | 194 | 9804 | 210 | 112 | 53.3333 | |
| eyeh-varpipe | INDEL | I1_5 | map_l125_m1_e0 | * | 97.7465 | 97.5904 | 97.9032 | 84.3789 | 810 | 20 | 1214 | 26 | 17 | 65.3846 | |
| bgallagher-sentieon | SNP | ti | map_l150_m0_e0 | het | 98.4386 | 98.9798 | 97.9033 | 83.1082 | 5045 | 52 | 5043 | 108 | 15 | 13.8889 | |
| jpowers-varprowl | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | * | 98.2548 | 98.6087 | 97.9035 | 45.6956 | 3402 | 48 | 3409 | 73 | 33 | 45.2055 | |
| ckim-dragen | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 95.8932 | 93.9638 | 97.9036 | 75.4630 | 467 | 30 | 467 | 10 | 10 | 100.0000 | |
| ndellapenna-hhga | INDEL | D1_5 | map_l150_m1_e0 | het | 97.3931 | 96.8880 | 97.9036 | 87.3876 | 467 | 15 | 467 | 10 | 3 | 30.0000 | |
| rpoplin-dv42 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 97.3306 | 96.7640 | 97.9038 | 49.8941 | 21530 | 720 | 21531 | 461 | 429 | 93.0586 | |
| gduggal-bwafb | SNP | tv | map_l100_m2_e1 | het | 98.4812 | 99.0651 | 97.9041 | 72.6029 | 15789 | 149 | 15789 | 338 | 49 | 14.4970 | |
| eyeh-varpipe | SNP | tv | map_l250_m1_e0 | * | 98.7000 | 99.5089 | 97.9042 | 90.2532 | 2634 | 13 | 2616 | 56 | 6 | 10.7143 | |
| hfeng-pmm1 | INDEL | * | map_l150_m0_e0 | het | 96.5886 | 95.3079 | 97.9042 | 90.5060 | 325 | 16 | 327 | 7 | 1 | 14.2857 | |
| ckim-isaac | INDEL | * | map_l100_m0_e0 | het | 80.6462 | 68.5602 | 97.9050 | 88.4199 | 700 | 321 | 701 | 15 | 5 | 33.3333 | |
| astatham-gatk | SNP | tv | map_l250_m0_e0 | homalt | 97.3958 | 96.8912 | 97.9058 | 92.3692 | 187 | 6 | 187 | 4 | 3 | 75.0000 | |
| egarrison-hhga | INDEL | I1_5 | map_l125_m0_e0 | het | 97.6501 | 97.3958 | 97.9058 | 89.8727 | 187 | 5 | 187 | 4 | 1 | 25.0000 | |