PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
53601-53650 / 86044 show all | |||||||||||||||
| mlin-fermikit | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 97.0720 | 97.0065 | 97.1375 | 69.1696 | 2074 | 64 | 2070 | 61 | 54 | 88.5246 | |
| cchapple-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 98.2813 | 99.4514 | 97.1385 | 53.8661 | 11421 | 63 | 11406 | 336 | 321 | 95.5357 | |
| asubramanian-gatk | INDEL | * | map_siren | het | 91.9143 | 87.2227 | 97.1393 | 86.6717 | 3932 | 576 | 3939 | 116 | 14 | 12.0690 | |
| jlack-gatk | SNP | ti | segdup | * | 98.4574 | 99.8106 | 97.1403 | 92.8551 | 19500 | 37 | 19498 | 574 | 10 | 1.7422 | |
| gduggal-snapfb | SNP | tv | * | het | 98.4503 | 99.7960 | 97.1404 | 29.1063 | 590497 | 1207 | 590839 | 17393 | 571 | 3.2829 | |
| jli-custom | INDEL | I6_15 | * | homalt | 98.3861 | 99.6634 | 97.1411 | 49.1984 | 6218 | 21 | 6218 | 183 | 180 | 98.3607 | |
| jli-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 88.3117 | 80.9524 | 97.1429 | 99.2233 | 34 | 8 | 34 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | I1_5 | map_l250_m1_e0 | * | 96.6825 | 96.2264 | 97.1429 | 95.3146 | 102 | 4 | 102 | 3 | 2 | 66.6667 | |
| jlack-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 98.5507 | 100.0000 | 97.1429 | 69.2982 | 68 | 0 | 68 | 2 | 2 | 100.0000 | |
| jlack-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 94.4444 | 91.8919 | 97.1429 | 87.8472 | 34 | 3 | 34 | 1 | 1 | 100.0000 | |
| jlack-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | * | 93.7931 | 90.6667 | 97.1429 | 62.7660 | 68 | 7 | 68 | 2 | 2 | 100.0000 | |
| jlack-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 94.4444 | 91.8919 | 97.1429 | 63.9175 | 34 | 3 | 34 | 1 | 1 | 100.0000 | |
| bgallagher-sentieon | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 98.5507 | 100.0000 | 97.1429 | 70.3390 | 68 | 0 | 68 | 2 | 2 | 100.0000 | |
| astatham-gatk | INDEL | D6_15 | map_l125_m2_e0 | het | 96.4539 | 95.7746 | 97.1429 | 92.7611 | 68 | 3 | 68 | 2 | 1 | 50.0000 | |
| astatham-gatk | INDEL | D6_15 | map_l125_m2_e1 | het | 96.4539 | 95.7746 | 97.1429 | 92.9078 | 68 | 3 | 68 | 2 | 1 | 50.0000 | |
| asubramanian-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 91.8919 | 87.1795 | 97.1429 | 60.6742 | 34 | 5 | 34 | 1 | 1 | 100.0000 | |
| bgallagher-sentieon | INDEL | D6_15 | map_l125_m2_e0 | het | 96.4539 | 95.7746 | 97.1429 | 92.6625 | 68 | 3 | 68 | 2 | 1 | 50.0000 | |
| bgallagher-sentieon | INDEL | D6_15 | map_l125_m2_e1 | het | 96.4539 | 95.7746 | 97.1429 | 92.8131 | 68 | 3 | 68 | 2 | 1 | 50.0000 | |
| jmaeng-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 94.4444 | 91.8919 | 97.1429 | 86.3281 | 34 | 3 | 34 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | * | 92.3981 | 88.0952 | 97.1429 | 87.9310 | 37 | 5 | 34 | 1 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 97.9827 | 98.8372 | 97.1429 | 80.2036 | 170 | 2 | 170 | 5 | 1 | 20.0000 | |
| gduggal-bwafb | INDEL | D1_5 | map_l125_m2_e0 | het | 97.4578 | 97.7749 | 97.1429 | 86.0457 | 747 | 17 | 748 | 22 | 0 | 0.0000 | |
| gduggal-bwafb | INDEL | D6_15 | map_l125_m2_e0 | homalt | 95.7746 | 94.4444 | 97.1429 | 91.7258 | 34 | 2 | 34 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | I6_15 | func_cds | * | 87.1795 | 79.0698 | 97.1429 | 43.5484 | 34 | 9 | 34 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | I1_5 | map_l250_m1_e0 | * | 97.1563 | 97.1698 | 97.1429 | 94.7130 | 103 | 3 | 170 | 5 | 4 | 80.0000 | |
| ckim-isaac | INDEL | D1_5 | map_l250_m2_e0 | het | 69.8630 | 54.5455 | 97.1429 | 97.2167 | 66 | 55 | 68 | 2 | 2 | 100.0000 | |
| ckim-isaac | INDEL | D1_5 | map_l250_m2_e1 | het | 69.4952 | 54.0984 | 97.1429 | 97.2741 | 66 | 56 | 68 | 2 | 2 | 100.0000 | |
| dgrover-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 98.3471 | 99.5816 | 97.1429 | 61.6188 | 714 | 3 | 714 | 21 | 20 | 95.2381 | |
| dgrover-gatk | INDEL | D6_15 | map_l125_m2_e0 | het | 96.4539 | 95.7746 | 97.1429 | 92.9435 | 68 | 3 | 68 | 2 | 1 | 50.0000 | |
| dgrover-gatk | INDEL | D6_15 | map_l125_m2_e1 | het | 96.4539 | 95.7746 | 97.1429 | 93.0830 | 68 | 3 | 68 | 2 | 1 | 50.0000 | |
| ckim-vqsr | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | * | 94.4355 | 91.8750 | 97.1429 | 81.8436 | 441 | 39 | 442 | 13 | 12 | 92.3077 | |
| ckim-vqsr | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | * | 83.9506 | 73.9130 | 97.1429 | 57.8313 | 68 | 24 | 68 | 2 | 1 | 50.0000 | |
| ckim-vqsr | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | het | 95.7746 | 94.4444 | 97.1429 | 88.4488 | 34 | 2 | 34 | 1 | 0 | 0.0000 | |
| eyeh-varpipe | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 98.5507 | 100.0000 | 97.1429 | 98.4047 | 10 | 0 | 34 | 1 | 1 | 100.0000 | |
| egarrison-hhga | INDEL | D1_5 | map_l100_m0_e0 | het | 97.4705 | 97.8003 | 97.1429 | 84.6491 | 578 | 13 | 578 | 17 | 3 | 17.6471 | |
| egarrison-hhga | INDEL | D1_5 | map_l100_m2_e0 | hetalt | 83.3042 | 72.9167 | 97.1429 | 92.3077 | 35 | 13 | 34 | 1 | 1 | 100.0000 | |
| gduggal-snapplat | INDEL | I1_5 | map_l250_m1_e0 | homalt | 84.6473 | 75.0000 | 97.1429 | 97.2332 | 33 | 11 | 34 | 1 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 95.6930 | 94.2857 | 97.1429 | 83.7209 | 33 | 2 | 34 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | INDEL | I6_15 | map_l100_m1_e0 | * | 93.1507 | 89.4737 | 97.1429 | 84.5133 | 102 | 12 | 102 | 3 | 2 | 66.6667 | |
| rpoplin-dv42 | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | * | 88.3117 | 80.9524 | 97.1429 | 97.1797 | 34 | 8 | 34 | 1 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 55.5615 | 38.9075 | 97.1429 | 49.6732 | 349 | 548 | 374 | 11 | 11 | 100.0000 | |
| mlin-fermikit | INDEL | I1_5 | map_l150_m2_e1 | het | 59.5186 | 42.9022 | 97.1429 | 85.6704 | 136 | 181 | 136 | 4 | 2 | 50.0000 | |
| mlin-fermikit | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 94.6799 | 92.3387 | 97.1429 | 70.2456 | 916 | 76 | 918 | 27 | 3 | 11.1111 | |
| rpoplin-dv42 | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 94.4444 | 91.8919 | 97.1429 | 58.3333 | 34 | 3 | 34 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | het | 95.0915 | 93.1250 | 97.1429 | 88.2452 | 149 | 11 | 136 | 4 | 2 | 50.0000 | |
| raldana-dualsentieon | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 98.5507 | 100.0000 | 97.1429 | 69.4323 | 68 | 0 | 68 | 2 | 2 | 100.0000 | |
| ckim-dragen | INDEL | D6_15 | map_l125_m2_e0 | homalt | 95.7746 | 94.4444 | 97.1429 | 91.1392 | 34 | 2 | 34 | 1 | 1 | 100.0000 | |
| ckim-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | * | 83.9506 | 73.9130 | 97.1429 | 57.8313 | 68 | 24 | 68 | 2 | 1 | 50.0000 | |
| ckim-gatk | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | het | 95.7746 | 94.4444 | 97.1429 | 88.4488 | 34 | 2 | 34 | 1 | 0 | 0.0000 | |
| gduggal-bwavard | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | * | 97.5597 | 97.9780 | 97.1450 | 52.3866 | 10515 | 217 | 10446 | 307 | 67 | 21.8241 | |