PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
52801-52850 / 86044 show all | |||||||||||||||
| qzeng-custom | SNP | * | map_l150_m2_e0 | * | 81.2952 | 70.0678 | 96.8072 | 87.0114 | 22318 | 9534 | 22073 | 728 | 620 | 85.1648 | |
| ckim-vqsr | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | * | 93.3333 | 90.0990 | 96.8085 | 93.6314 | 91 | 10 | 91 | 3 | 3 | 100.0000 | |
| jmaeng-gatk | INDEL | D6_15 | map_siren | het | 97.3300 | 97.8571 | 96.8085 | 89.1371 | 274 | 6 | 273 | 9 | 2 | 22.2222 | |
| gduggal-snapfb | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 96.9484 | 97.0888 | 96.8085 | 71.1597 | 1334 | 40 | 1365 | 45 | 15 | 33.3333 | |
| hfeng-pmm1 | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | het | 95.4941 | 94.2149 | 96.8085 | 80.8641 | 912 | 56 | 819 | 27 | 18 | 66.6667 | |
| astatham-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 97.8791 | 98.9737 | 96.8085 | 71.3456 | 5786 | 60 | 5733 | 189 | 174 | 92.0635 | |
| astatham-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 97.8791 | 98.9737 | 96.8085 | 71.3456 | 5786 | 60 | 5733 | 189 | 174 | 92.0635 | |
| gduggal-bwafb | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 94.7146 | 92.7089 | 96.8091 | 59.8061 | 29118 | 2290 | 29975 | 988 | 774 | 78.3401 | |
| gduggal-bwafb | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 94.7146 | 92.7089 | 96.8091 | 59.8061 | 29118 | 2290 | 29975 | 988 | 774 | 78.3401 | |
| jmaeng-gatk | SNP | ti | map_l250_m2_e1 | het | 74.6274 | 60.7154 | 96.8101 | 96.8027 | 2003 | 1296 | 2003 | 66 | 8 | 12.1212 | |
| gduggal-bwaplat | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | * | 84.3374 | 74.7117 | 96.8102 | 79.6075 | 3628 | 1228 | 3642 | 120 | 34 | 28.3333 | |
| rpoplin-dv42 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 96.2804 | 95.7563 | 96.8102 | 77.5473 | 41496 | 1839 | 41428 | 1365 | 1297 | 95.0183 | |
| ltrigg-rtg2 | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 97.2799 | 97.7540 | 96.8105 | 66.5390 | 4657 | 107 | 4735 | 156 | 5 | 3.2051 | |
| hfeng-pmm2 | INDEL | D16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 96.1875 | 95.5720 | 96.8111 | 79.9607 | 1295 | 60 | 1184 | 39 | 25 | 64.1026 | |
| hfeng-pmm2 | INDEL | D1_5 | map_l125_m2_e0 | het | 97.9343 | 99.0838 | 96.8112 | 87.3344 | 757 | 7 | 759 | 25 | 2 | 8.0000 | |
| rpoplin-dv42 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 95.4200 | 94.0678 | 96.8116 | 67.6966 | 333 | 21 | 334 | 11 | 10 | 90.9091 | |
| eyeh-varpipe | INDEL | I1_5 | HG002complexvar | hetalt | 71.6240 | 56.8366 | 96.8118 | 75.7679 | 981 | 745 | 1245 | 41 | 39 | 95.1220 | |
| ckim-isaac | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 93.5449 | 90.4908 | 96.8125 | 75.4534 | 3835 | 403 | 3918 | 129 | 10 | 7.7519 | |
| qzeng-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 98.0362 | 99.2900 | 96.8136 | 69.3472 | 1818 | 13 | 1823 | 60 | 2 | 3.3333 | |
| egarrison-hhga | INDEL | * | * | het | 97.8735 | 98.9564 | 96.8141 | 57.0135 | 192107 | 2026 | 193181 | 6357 | 5653 | 88.9256 | |
| egarrison-hhga | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 94.8534 | 92.9705 | 96.8142 | 85.5904 | 1640 | 124 | 1641 | 54 | 22 | 40.7407 | |
| rpoplin-dv42 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 97.8086 | 98.8224 | 96.8153 | 66.1962 | 13595 | 162 | 13589 | 447 | 406 | 90.8277 | |
| rpoplin-dv42 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 97.8086 | 98.8224 | 96.8153 | 66.1962 | 13595 | 162 | 13589 | 447 | 406 | 90.8277 | |
| ghariani-varprowl | INDEL | * | map_l150_m0_e0 | homalt | 94.7040 | 92.6829 | 96.8153 | 91.0541 | 152 | 12 | 152 | 5 | 2 | 40.0000 | |
| asubramanian-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 95.2810 | 93.7940 | 96.8159 | 46.5107 | 2796 | 185 | 3740 | 123 | 114 | 92.6829 | |
| cchapple-custom | SNP | ti | map_l125_m0_e0 | * | 96.3333 | 95.8549 | 96.8166 | 76.6174 | 12233 | 529 | 12226 | 402 | 120 | 29.8507 | |
| hfeng-pmm2 | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 96.9456 | 97.0745 | 96.8170 | 60.7087 | 730 | 22 | 730 | 24 | 24 | 100.0000 | |
| asubramanian-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | * | 95.7178 | 94.6429 | 96.8174 | 68.4294 | 583 | 33 | 578 | 19 | 17 | 89.4737 | |
| jlack-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 97.7064 | 98.6111 | 96.8182 | 66.6667 | 213 | 3 | 213 | 7 | 6 | 85.7143 | |
| bgallagher-sentieon | INDEL | * | map_l150_m2_e1 | het | 97.5914 | 98.3766 | 96.8187 | 91.2287 | 909 | 15 | 913 | 30 | 4 | 13.3333 | |
| jlack-gatk | INDEL | D6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 98.1705 | 99.5602 | 96.8190 | 57.4112 | 3622 | 16 | 3622 | 119 | 117 | 98.3193 | |
| jli-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 96.6502 | 96.4816 | 96.8193 | 81.9352 | 1755 | 64 | 1522 | 50 | 37 | 74.0000 | |
| jli-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 96.6502 | 96.4816 | 96.8193 | 81.9352 | 1755 | 64 | 1522 | 50 | 37 | 74.0000 | |
| gduggal-bwafb | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 91.7011 | 87.0959 | 96.8206 | 45.2421 | 9672 | 1433 | 2223 | 73 | 72 | 98.6301 | |
| ndellapenna-hhga | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 95.4245 | 94.0678 | 96.8208 | 67.3893 | 333 | 21 | 335 | 11 | 8 | 72.7273 | |
| ckim-dragen | INDEL | * | map_siren | het | 97.4637 | 98.1145 | 96.8216 | 84.6377 | 4423 | 85 | 4417 | 145 | 14 | 9.6552 | |
| rpoplin-dv42 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 96.1130 | 95.4143 | 96.8220 | 50.6721 | 14107 | 678 | 14106 | 463 | 453 | 97.8402 | |
| qzeng-custom | SNP | * | map_l150_m2_e1 | * | 81.4031 | 70.2204 | 96.8222 | 87.0167 | 22618 | 9592 | 22364 | 734 | 626 | 85.2861 | |
| raldana-dualsentieon | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 93.6115 | 90.6040 | 96.8254 | 76.2264 | 135 | 14 | 122 | 4 | 3 | 75.0000 | |
| hfeng-pmm2 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 96.1351 | 95.4545 | 96.8254 | 88.2463 | 63 | 3 | 61 | 2 | 0 | 0.0000 | |
| jlack-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 96.4427 | 96.0630 | 96.8254 | 78.2007 | 122 | 5 | 122 | 4 | 3 | 75.0000 | |
| jlack-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 96.1351 | 95.4545 | 96.8254 | 89.0815 | 63 | 3 | 61 | 2 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 96.1351 | 95.4545 | 96.8254 | 87.7907 | 63 | 3 | 61 | 2 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | I1_5 | map_l250_m2_e0 | het | 94.5736 | 92.4242 | 96.8254 | 96.9163 | 61 | 5 | 61 | 2 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | I1_5 | map_l250_m2_e1 | het | 94.5736 | 92.4242 | 96.8254 | 97.0199 | 61 | 5 | 61 | 2 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | * | 78.7097 | 66.3043 | 96.8254 | 60.1266 | 61 | 31 | 61 | 2 | 1 | 50.0000 | |
| egarrison-hhga | INDEL | I6_15 | map_siren | hetalt | 90.3704 | 84.7222 | 96.8254 | 79.8077 | 61 | 11 | 61 | 2 | 2 | 100.0000 | |
| gduggal-bwaplat | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 80.2213 | 68.4783 | 96.8254 | 76.4045 | 63 | 29 | 61 | 2 | 1 | 50.0000 | |
| hfeng-pmm1 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 96.1351 | 95.4545 | 96.8254 | 88.0682 | 63 | 3 | 61 | 2 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | D6_15 | map_l100_m1_e0 | het | 96.8254 | 96.8254 | 96.8254 | 82.8571 | 122 | 4 | 122 | 4 | 0 | 0.0000 | |