PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
51901-51950 / 86044 show all | |||||||||||||||
| ckim-vqsr | INDEL | I6_15 | map_l125_m2_e1 | het | 93.1034 | 90.0000 | 96.4286 | 95.2055 | 27 | 3 | 27 | 1 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | D1_5 | map_l100_m0_e0 | * | 96.7071 | 96.9873 | 96.4286 | 89.7798 | 837 | 26 | 837 | 31 | 4 | 12.9032 | |
| ckim-isaac | INDEL | D6_15 | func_cds | het | 96.4901 | 96.5517 | 96.4286 | 42.8571 | 28 | 1 | 27 | 1 | 1 | 100.0000 | |
| ckim-isaac | INDEL | D6_15 | map_l100_m2_e1 | * | 65.3788 | 49.4545 | 96.4286 | 84.2697 | 136 | 139 | 135 | 5 | 4 | 80.0000 | |
| ckim-isaac | INDEL | I1_5 | map_siren | hetalt | 85.4934 | 76.7857 | 96.4286 | 82.2410 | 86 | 26 | 81 | 3 | 2 | 66.6667 | |
| qzeng-custom | INDEL | I1_5 | map_l250_m1_e0 | homalt | 59.6512 | 43.1818 | 96.4286 | 96.5895 | 19 | 25 | 27 | 1 | 0 | 0.0000 | |
| rpoplin-dv42 | SNP | * | map_siren | hetalt | 98.1818 | 100.0000 | 96.4286 | 79.8561 | 81 | 0 | 81 | 3 | 3 | 100.0000 | |
| rpoplin-dv42 | SNP | tv | map_siren | hetalt | 98.1818 | 100.0000 | 96.4286 | 79.8561 | 81 | 0 | 81 | 3 | 3 | 100.0000 | |
| rpoplin-dv42 | INDEL | D16_PLUS | HG002complexvar | hetalt | 82.7498 | 72.4696 | 96.4286 | 49.8208 | 179 | 68 | 270 | 10 | 10 | 100.0000 | |
| ndellapenna-hhga | INDEL | I6_15 | map_l100_m2_e1 | * | 94.7368 | 93.1034 | 96.4286 | 86.7612 | 108 | 8 | 108 | 4 | 2 | 50.0000 | |
| ndellapenna-hhga | INDEL | I6_15 | map_l125_m1_e0 | het | 93.1034 | 90.0000 | 96.4286 | 89.8917 | 27 | 3 | 27 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | I6_15 | map_l125_m2_e0 | het | 93.1034 | 90.0000 | 96.4286 | 90.8497 | 27 | 3 | 27 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | I6_15 | map_l125_m2_e1 | het | 93.1034 | 90.0000 | 96.4286 | 91.0256 | 27 | 3 | 27 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | SNP | ti | map_l100_m2_e1 | hetalt | 91.5254 | 87.0968 | 96.4286 | 78.6260 | 27 | 4 | 27 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | INDEL | D6_15 | map_l150_m2_e0 | homalt | 96.4286 | 96.4286 | 96.4286 | 89.5911 | 27 | 1 | 27 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | D16_PLUS | map_l125_m1_e0 | * | 98.1818 | 100.0000 | 96.4286 | 94.9911 | 27 | 0 | 27 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | D16_PLUS | map_l125_m2_e0 | * | 98.1818 | 100.0000 | 96.4286 | 95.6386 | 27 | 0 | 27 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | D16_PLUS | map_l125_m2_e1 | * | 96.4286 | 96.4286 | 96.4286 | 95.7382 | 27 | 1 | 27 | 1 | 0 | 0.0000 | |
| jlack-gatk | INDEL | * | map_l250_m1_e0 | homalt | 97.7376 | 99.0826 | 96.4286 | 94.6180 | 108 | 1 | 108 | 4 | 3 | 75.0000 | |
| hfeng-pmm2 | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 93.9412 | 91.5789 | 96.4286 | 90.1869 | 87 | 8 | 81 | 3 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | I6_15 | map_l100_m0_e0 | * | 88.5246 | 81.8182 | 96.4286 | 91.9540 | 27 | 6 | 27 | 1 | 1 | 100.0000 | |
| ckim-gatk | INDEL | I6_15 | segdup | het | 97.0060 | 97.5904 | 96.4286 | 95.3203 | 81 | 2 | 81 | 3 | 0 | 0.0000 | |
| ckim-gatk | SNP | * | map_l100_m1_e0 | hetalt | 78.2609 | 65.8537 | 96.4286 | 89.0625 | 27 | 14 | 27 | 1 | 1 | 100.0000 | |
| ckim-gatk | SNP | tv | map_l100_m1_e0 | hetalt | 78.2609 | 65.8537 | 96.4286 | 89.0625 | 27 | 14 | 27 | 1 | 1 | 100.0000 | |
| ckim-dragen | INDEL | D1_5 | map_l100_m0_e0 | * | 96.8796 | 97.3349 | 96.4286 | 86.1120 | 840 | 23 | 837 | 31 | 4 | 12.9032 | |
| gduggal-snapplat | INDEL | * | map_l100_m0_e0 | homalt | 83.5293 | 73.6739 | 96.4286 | 89.2418 | 375 | 134 | 405 | 15 | 1 | 6.6667 | |
| hfeng-pmm1 | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 93.9412 | 91.5789 | 96.4286 | 90.0119 | 87 | 8 | 81 | 3 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 56.5642 | 40.0198 | 96.4286 | 46.2791 | 2430 | 3642 | 2673 | 99 | 84 | 84.8485 | |
| astatham-gatk | INDEL | I1_5 | map_l250_m2_e1 | * | 95.5752 | 94.7368 | 96.4286 | 96.5770 | 108 | 6 | 108 | 4 | 2 | 50.0000 | |
| asubramanian-gatk | INDEL | I6_15 | map_l100_m1_e0 | het | 92.0958 | 88.1356 | 96.4286 | 90.1060 | 52 | 7 | 54 | 2 | 1 | 50.0000 | |
| bgallagher-sentieon | INDEL | I1_5 | map_l250_m2_e0 | * | 96.0000 | 95.5752 | 96.4286 | 96.3170 | 108 | 5 | 108 | 4 | 2 | 50.0000 | |
| gduggal-snapfb | SNP | * | map_l150_m2_e1 | * | 96.3459 | 96.2620 | 96.4300 | 78.3975 | 31006 | 1204 | 31009 | 1148 | 531 | 46.2544 | |
| jmaeng-gatk | SNP | * | map_l150_m2_e0 | het | 84.8178 | 75.7016 | 96.4302 | 90.4936 | 15241 | 4892 | 15235 | 564 | 39 | 6.9149 | |
| ckim-isaac | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 94.2766 | 92.2164 | 96.4310 | 62.9827 | 1398 | 118 | 1405 | 52 | 20 | 38.4615 | |
| jli-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 96.4114 | 96.3910 | 96.4318 | 79.9786 | 1282 | 48 | 1081 | 40 | 36 | 90.0000 | |
| ckim-dragen | INDEL | D6_15 | HG002complexvar | hetalt | 93.7506 | 91.2142 | 96.4321 | 47.8822 | 924 | 89 | 973 | 36 | 36 | 100.0000 | |
| ckim-dragen | SNP | tv | map_l150_m2_e1 | het | 97.5102 | 98.6119 | 96.4328 | 82.1323 | 7246 | 102 | 7245 | 268 | 17 | 6.3433 | |
| asubramanian-gatk | INDEL | D1_5 | HG002complexvar | hetalt | 94.5568 | 92.7515 | 96.4339 | 73.6698 | 1254 | 98 | 1298 | 48 | 47 | 97.9167 | |
| anovak-vg | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 96.0448 | 95.6587 | 96.4340 | 58.7351 | 1278 | 58 | 1271 | 47 | 25 | 53.1915 | |
| cchapple-custom | SNP | * | map_l250_m2_e1 | * | 96.1831 | 95.9309 | 96.4367 | 90.2654 | 7662 | 325 | 7659 | 283 | 66 | 23.3216 | |
| mlin-fermikit | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 96.1180 | 95.8000 | 96.4382 | 69.3543 | 2874 | 126 | 2870 | 106 | 91 | 85.8491 | |
| ltrigg-rtg2 | INDEL | * | HG002compoundhet | het | 95.9824 | 95.5300 | 96.4390 | 67.6682 | 3911 | 183 | 3954 | 146 | 79 | 54.1096 | |
| ckim-dragen | SNP | tv | map_l150_m2_e0 | het | 97.5182 | 98.6211 | 96.4396 | 82.0747 | 7152 | 100 | 7151 | 264 | 17 | 6.4394 | |
| jlack-gatk | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 95.8754 | 95.3172 | 96.4401 | 77.6815 | 631 | 31 | 596 | 22 | 12 | 54.5455 | |
| ltrigg-rtg2 | INDEL | I16_PLUS | HG002complexvar | homalt | 95.2945 | 94.1748 | 96.4413 | 53.1667 | 291 | 18 | 271 | 10 | 10 | 100.0000 | |
| cchapple-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 93.6110 | 90.9420 | 96.4413 | 90.6799 | 251 | 25 | 271 | 10 | 1 | 10.0000 | |
| cchapple-custom | INDEL | D16_PLUS | HG002complexvar | homalt | 96.3174 | 96.1938 | 96.4413 | 59.2754 | 278 | 11 | 271 | 10 | 9 | 90.0000 | |
| gduggal-snapfb | SNP | * | map_l100_m2_e1 | het | 97.3145 | 98.2025 | 96.4425 | 69.0883 | 46055 | 843 | 46059 | 1699 | 659 | 38.7875 | |
| eyeh-varpipe | INDEL | I1_5 | segdup | homalt | 97.3667 | 98.3087 | 96.4427 | 92.5159 | 465 | 8 | 488 | 18 | 18 | 100.0000 | |
| cchapple-custom | SNP | * | map_l150_m1_e0 | * | 96.5908 | 96.7363 | 96.4458 | 77.1687 | 29610 | 999 | 29605 | 1091 | 240 | 21.9982 | |