PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
51501-51550 / 86044 show all | |||||||||||||||
| jpowers-varprowl | INDEL | I1_5 | map_l150_m2_e1 | * | 93.8224 | 91.5254 | 96.2376 | 90.4986 | 486 | 45 | 486 | 19 | 11 | 57.8947 | |
| jmaeng-gatk | SNP | tv | map_l250_m2_e1 | * | 69.5004 | 54.3896 | 96.2379 | 96.4989 | 1586 | 1330 | 1586 | 62 | 2 | 3.2258 | |
| ndellapenna-hhga | INDEL | D1_5 | * | het | 97.6637 | 99.1299 | 96.2402 | 54.0039 | 86812 | 762 | 87337 | 3412 | 3186 | 93.3763 | |
| ckim-dragen | INDEL | D6_15 | map_l100_m2_e0 | het | 96.9697 | 97.7099 | 96.2406 | 91.0377 | 128 | 3 | 128 | 5 | 0 | 0.0000 | |
| eyeh-varpipe | INDEL | * | map_l250_m1_e0 | het | 96.2782 | 96.3158 | 96.2406 | 94.6853 | 183 | 7 | 256 | 10 | 4 | 40.0000 | |
| ckim-isaac | INDEL | D6_15 | map_l100_m1_e0 | * | 65.8098 | 50.0000 | 96.2406 | 83.4577 | 129 | 129 | 128 | 5 | 4 | 80.0000 | |
| bgallagher-sentieon | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 95.4289 | 94.6309 | 96.2406 | 77.3424 | 141 | 8 | 128 | 5 | 3 | 60.0000 | |
| astatham-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 95.7690 | 95.3020 | 96.2406 | 77.7219 | 142 | 7 | 128 | 5 | 3 | 60.0000 | |
| hfeng-pmm2 | INDEL | D6_15 | map_l100_m2_e0 | het | 96.9697 | 97.7099 | 96.2406 | 89.0445 | 128 | 3 | 128 | 5 | 1 | 20.0000 | |
| jli-custom | INDEL | D6_15 | map_l100_m2_e0 | het | 96.5923 | 96.9466 | 96.2406 | 87.4882 | 127 | 4 | 128 | 5 | 1 | 20.0000 | |
| ltrigg-rtg2 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 97.2347 | 98.2481 | 96.2420 | 74.4091 | 8973 | 160 | 9117 | 356 | 12 | 3.3708 | |
| ltrigg-rtg2 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 97.2347 | 98.2481 | 96.2420 | 74.4091 | 8973 | 160 | 9117 | 356 | 12 | 3.3708 | |
| dgrover-gatk | INDEL | * | map_l150_m0_e0 | het | 96.6534 | 97.0674 | 96.2428 | 93.6769 | 331 | 10 | 333 | 13 | 1 | 7.6923 | |
| anovak-vg | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 96.3287 | 96.4131 | 96.2444 | 58.5642 | 3790 | 141 | 3844 | 150 | 63 | 42.0000 | |
| raldana-dualsentieon | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_11to50 | het | 95.2210 | 94.2188 | 96.2448 | 59.6025 | 2575 | 158 | 2563 | 100 | 97 | 97.0000 | |
| gduggal-snapfb | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | * | 96.0497 | 95.8548 | 96.2454 | 43.3162 | 3908 | 169 | 3922 | 153 | 80 | 52.2876 | |
| ghariani-varprowl | SNP | ti | map_l100_m0_e0 | het | 97.4217 | 98.6269 | 96.2456 | 76.6277 | 13791 | 192 | 13792 | 538 | 130 | 24.1636 | |
| ckim-isaac | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_11to50 | * | 93.9157 | 91.6952 | 96.2464 | 33.3267 | 22502 | 2038 | 22436 | 875 | 753 | 86.0571 | |
| eyeh-varpipe | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 50.9371 | 34.6330 | 96.2465 | 52.9921 | 3846 | 7259 | 5436 | 212 | 205 | 96.6981 | |
| rpoplin-dv42 | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 87.2466 | 79.7847 | 96.2482 | 67.1252 | 667 | 169 | 667 | 26 | 23 | 88.4615 | |
| gduggal-bwaplat | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 83.3451 | 73.4925 | 96.2484 | 91.4731 | 3047 | 1099 | 3053 | 119 | 21 | 17.6471 | |
| mlin-fermikit | INDEL | I6_15 | segdup | * | 91.9403 | 88.0000 | 96.2500 | 90.6268 | 154 | 21 | 154 | 6 | 6 | 100.0000 | |
| eyeh-varpipe | INDEL | D1_5 | map_l250_m2_e1 | * | 97.0374 | 97.8378 | 96.2500 | 95.1120 | 181 | 4 | 231 | 9 | 4 | 44.4444 | |
| ltrigg-rtg2 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 95.6522 | 95.0617 | 96.2500 | 69.2308 | 77 | 4 | 77 | 3 | 1 | 33.3333 | |
| ckim-gatk | SNP | * | map_l150_m0_e0 | het | 75.5141 | 62.1285 | 96.2515 | 93.6797 | 4933 | 3007 | 4930 | 192 | 25 | 13.0208 | |
| gduggal-snapfb | INDEL | D6_15 | HG002compoundhet | het | 60.7617 | 44.3925 | 96.2540 | 19.2156 | 380 | 476 | 5730 | 223 | 211 | 94.6188 | |
| gduggal-snapfb | INDEL | D6_15 | map_siren | het | 84.5335 | 75.3571 | 96.2547 | 69.0972 | 211 | 69 | 257 | 10 | 9 | 90.0000 | |
| asubramanian-gatk | INDEL | D6_15 | map_siren | het | 94.1539 | 92.1429 | 96.2547 | 88.8191 | 258 | 22 | 257 | 10 | 2 | 20.0000 | |
| gduggal-snapplat | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 74.3629 | 60.5839 | 96.2547 | 84.1166 | 249 | 162 | 257 | 10 | 6 | 60.0000 | |
| gduggal-bwaplat | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 81.2482 | 70.2896 | 96.2549 | 70.8872 | 30460 | 12875 | 30456 | 1185 | 636 | 53.6709 | |
| ckim-gatk | INDEL | D6_15 | HG002compoundhet | * | 95.5310 | 94.8178 | 96.2551 | 36.1757 | 8563 | 468 | 8559 | 333 | 330 | 99.0991 | |
| qzeng-custom | INDEL | D1_5 | map_l125_m2_e1 | het | 86.8330 | 79.0909 | 96.2552 | 92.7907 | 609 | 161 | 694 | 27 | 21 | 77.7778 | |
| qzeng-custom | INDEL | I1_5 | map_l125_m1_e0 | het | 78.1967 | 65.8436 | 96.2555 | 92.8784 | 320 | 166 | 437 | 17 | 9 | 52.9412 | |
| eyeh-varpipe | INDEL | D1_5 | map_l100_m2_e0 | homalt | 97.3783 | 98.5270 | 96.2560 | 85.4148 | 602 | 9 | 797 | 31 | 25 | 80.6452 | |
| eyeh-varpipe | INDEL | * | map_l250_m2_e1 | homalt | 96.8318 | 97.4138 | 96.2567 | 95.5005 | 113 | 3 | 180 | 7 | 7 | 100.0000 | |
| rpoplin-dv42 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 91.8367 | 87.8049 | 96.2567 | 84.7844 | 180 | 25 | 180 | 7 | 6 | 85.7143 | |
| rpoplin-dv42 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 91.8367 | 87.8049 | 96.2567 | 84.7844 | 180 | 25 | 180 | 7 | 6 | 85.7143 | |
| jpowers-varprowl | INDEL | I1_5 | map_l150_m1_e0 | * | 93.8197 | 91.5020 | 96.2578 | 89.2801 | 463 | 43 | 463 | 18 | 11 | 61.1111 | |
| cchapple-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 95.1575 | 94.0810 | 96.2589 | 56.4633 | 3020 | 190 | 3242 | 126 | 118 | 93.6508 | |
| cchapple-custom | SNP | ti | map_l250_m0_e0 | het | 95.0637 | 93.8972 | 96.2596 | 94.5783 | 877 | 57 | 875 | 34 | 12 | 35.2941 | |
| ckim-dragen | SNP | tv | map_l150_m0_e0 | het | 97.0162 | 97.7840 | 96.2604 | 84.6993 | 2780 | 63 | 2780 | 108 | 8 | 7.4074 | |
| ciseli-custom | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 97.8177 | 99.4251 | 96.2614 | 56.7778 | 6053 | 35 | 6025 | 234 | 108 | 46.1538 | |
| eyeh-varpipe | INDEL | I1_5 | map_l250_m1_e0 | het | 96.4637 | 96.6667 | 96.2617 | 94.0884 | 58 | 2 | 103 | 4 | 3 | 75.0000 | |
| hfeng-pmm3 | INDEL | I1_5 | map_l250_m1_e0 | * | 96.7136 | 97.1698 | 96.2617 | 95.2168 | 103 | 3 | 103 | 4 | 2 | 50.0000 | |
| raldana-dualsentieon | INDEL | I16_PLUS | HG002complexvar | homalt | 98.0952 | 100.0000 | 96.2617 | 68.7743 | 309 | 0 | 309 | 12 | 11 | 91.6667 | |
| cchapple-custom | SNP | * | map_l125_m0_e0 | * | 96.1705 | 96.0794 | 96.2618 | 77.2988 | 18625 | 760 | 18618 | 723 | 176 | 24.3430 | |
| dgrover-gatk | INDEL | I6_15 | HG002compoundhet | * | 94.9104 | 93.5962 | 96.2620 | 37.4707 | 8214 | 562 | 8215 | 319 | 317 | 99.3730 | |
| gduggal-snapplat | INDEL | * | map_l100_m2_e1 | homalt | 84.9123 | 75.9563 | 96.2625 | 87.8918 | 973 | 308 | 1056 | 41 | 2 | 4.8781 | |
| eyeh-varpipe | SNP | tv | * | het | 98.0748 | 99.9564 | 96.2628 | 25.2886 | 591446 | 258 | 583371 | 22648 | 112 | 0.4945 | |
| qzeng-custom | INDEL | * | map_l125_m2_e0 | homalt | 83.6240 | 73.9187 | 96.2629 | 86.5020 | 564 | 199 | 747 | 29 | 11 | 37.9310 | |