PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
51401-51450 / 86044 show all | |||||||||||||||
| gduggal-bwafb | INDEL | D6_15 | segdup | * | 92.1680 | 88.4817 | 96.1749 | 92.8987 | 169 | 22 | 176 | 7 | 7 | 100.0000 | |
| ckim-dragen | INDEL | I1_5 | map_l150_m2_e1 | * | 95.4459 | 94.7269 | 96.1759 | 90.8774 | 503 | 28 | 503 | 20 | 5 | 25.0000 | |
| eyeh-varpipe | SNP | * | map_l150_m1_e0 | het | 97.8416 | 99.5651 | 96.1767 | 79.2991 | 19232 | 84 | 18640 | 741 | 22 | 2.9690 | |
| jli-custom | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | het | 97.9793 | 99.8507 | 96.1768 | 39.7598 | 4682 | 7 | 4679 | 186 | 1 | 0.5376 | |
| bgallagher-sentieon | INDEL | D16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 97.7313 | 99.3358 | 96.1778 | 82.5839 | 1346 | 9 | 1233 | 49 | 32 | 65.3061 | |
| anovak-vg | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 95.6272 | 95.0801 | 96.1806 | 60.9315 | 1662 | 86 | 1662 | 66 | 49 | 74.2424 | |
| bgallagher-sentieon | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 96.5292 | 96.8794 | 96.1816 | 74.8551 | 1366 | 44 | 1335 | 53 | 43 | 81.1321 | |
| raldana-dualsentieon | INDEL | D16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 95.9131 | 95.6458 | 96.1820 | 79.8889 | 1296 | 59 | 1184 | 47 | 40 | 85.1064 | |
| ghariani-varprowl | SNP | tv | map_l125_m2_e0 | * | 97.4321 | 98.7143 | 96.1827 | 78.0708 | 16277 | 212 | 16277 | 646 | 117 | 18.1115 | |
| gduggal-bwafb | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | * | 97.5168 | 98.8880 | 96.1831 | 70.9711 | 4802 | 54 | 4813 | 191 | 46 | 24.0838 | |
| eyeh-varpipe | INDEL | D1_5 | map_l150_m0_e0 | homalt | 96.9096 | 97.6471 | 96.1832 | 92.2623 | 83 | 2 | 126 | 5 | 5 | 100.0000 | |
| hfeng-pmm1 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 94.7138 | 93.2886 | 96.1832 | 76.0073 | 139 | 10 | 126 | 5 | 4 | 80.0000 | |
| jlack-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 93.4254 | 90.8213 | 96.1832 | 73.6419 | 376 | 38 | 378 | 15 | 8 | 53.3333 | |
| ndellapenna-hhga | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 85.6804 | 77.2455 | 96.1832 | 69.2488 | 129 | 38 | 126 | 5 | 4 | 80.0000 | |
| ckim-dragen | INDEL | I1_5 | map_l150_m1_e0 | * | 95.4183 | 94.6640 | 96.1847 | 89.6830 | 479 | 27 | 479 | 19 | 5 | 26.3158 | |
| bgallagher-sentieon | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 98.0554 | 100.0000 | 96.1851 | 55.9528 | 2370 | 0 | 2370 | 94 | 93 | 98.9362 | |
| ckim-dragen | INDEL | * | map_l150_m1_e0 | * | 96.2243 | 96.2631 | 96.1855 | 90.5619 | 1288 | 50 | 1286 | 51 | 9 | 17.6471 | |
| ciseli-custom | SNP | tv | segdup | homalt | 97.7133 | 99.2897 | 96.1862 | 90.1152 | 3215 | 23 | 3203 | 127 | 72 | 56.6929 | |
| rpoplin-dv42 | INDEL | I6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 95.7880 | 95.3926 | 96.1867 | 75.7339 | 1470 | 71 | 1463 | 58 | 53 | 91.3793 | |
| egarrison-hhga | INDEL | * | map_l250_m2_e1 | het | 95.9620 | 95.7346 | 96.1905 | 96.0667 | 202 | 9 | 202 | 8 | 2 | 25.0000 | |
| bgallagher-sentieon | INDEL | I1_5 | map_l250_m1_e0 | * | 95.7346 | 95.2830 | 96.1905 | 95.9350 | 101 | 5 | 101 | 4 | 2 | 50.0000 | |
| astatham-gatk | INDEL | I1_5 | map_l250_m1_e0 | * | 95.7346 | 95.2830 | 96.1905 | 96.1024 | 101 | 5 | 101 | 4 | 2 | 50.0000 | |
| ckim-vqsr | INDEL | I6_15 | HG002compoundhet | * | 94.2580 | 92.3997 | 96.1926 | 36.2881 | 8109 | 667 | 8110 | 321 | 319 | 99.3769 | |
| gduggal-bwaplat | INDEL | I16_PLUS | HG002complexvar | * | 72.2938 | 57.9068 | 96.1929 | 69.4455 | 758 | 551 | 758 | 30 | 22 | 73.3333 | |
| ckim-isaac | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 94.0932 | 92.0824 | 96.1938 | 68.2998 | 849 | 73 | 834 | 33 | 15 | 45.4545 | |
| eyeh-varpipe | INDEL | * | map_l250_m2_e0 | homalt | 96.7898 | 97.3913 | 96.1957 | 95.4410 | 112 | 3 | 177 | 7 | 7 | 100.0000 | |
| hfeng-pmm1 | INDEL | * | map_l250_m1_e0 | het | 94.6524 | 93.1579 | 96.1957 | 95.0297 | 177 | 13 | 177 | 7 | 1 | 14.2857 | |
| ckim-dragen | SNP | tv | map_l125_m0_e0 | het | 97.2122 | 98.2504 | 96.1958 | 81.1222 | 4324 | 77 | 4324 | 171 | 10 | 5.8480 | |
| ckim-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 98.0003 | 99.8736 | 96.1960 | 56.0166 | 3161 | 4 | 3161 | 125 | 123 | 98.4000 | |
| dgrover-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 98.0161 | 99.9052 | 96.1971 | 56.0561 | 3162 | 3 | 3162 | 125 | 124 | 99.2000 | |
| astatham-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 98.0161 | 99.9052 | 96.1971 | 55.9029 | 3162 | 3 | 3162 | 125 | 124 | 99.2000 | |
| ghariani-varprowl | SNP | tv | map_l125_m2_e1 | * | 97.4430 | 98.7213 | 96.1975 | 78.1381 | 16444 | 213 | 16444 | 650 | 118 | 18.1538 | |
| asubramanian-gatk | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 93.3618 | 90.6883 | 96.1977 | 79.5490 | 224 | 23 | 253 | 10 | 6 | 60.0000 | |
| gduggal-snapfb | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 81.8508 | 71.2279 | 96.1979 | 32.2123 | 2332 | 942 | 6806 | 269 | 258 | 95.9108 | |
| qzeng-custom | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | het | 96.8049 | 97.4163 | 96.2011 | 51.9614 | 10821 | 287 | 18967 | 749 | 273 | 36.4486 | |
| ckim-vqsr | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 97.5970 | 99.0328 | 96.2023 | 69.6244 | 4403 | 43 | 4357 | 172 | 164 | 95.3488 | |
| asubramanian-gatk | INDEL | I1_5 | map_l125_m2_e0 | het | 85.0767 | 76.2575 | 96.2025 | 92.3568 | 379 | 118 | 380 | 15 | 1 | 6.6667 | |
| ndellapenna-hhga | SNP | * | tech_badpromoters | het | 97.4359 | 98.7013 | 96.2025 | 50.0000 | 76 | 1 | 76 | 3 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | I16_PLUS | map_siren | * | 91.4854 | 87.2093 | 96.2025 | 77.4929 | 75 | 11 | 76 | 3 | 2 | 66.6667 | |
| ndellapenna-hhga | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 94.3630 | 92.5926 | 96.2025 | 76.1329 | 75 | 6 | 76 | 3 | 3 | 100.0000 | |
| cchapple-custom | SNP | * | tech_badpromoters | het | 97.4359 | 98.7013 | 96.2025 | 56.1111 | 76 | 1 | 76 | 3 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | I6_15 | HG002compoundhet | hetalt | 53.1182 | 36.6874 | 96.2041 | 33.7320 | 3132 | 5405 | 3092 | 122 | 97 | 79.5082 | |
| eyeh-varpipe | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 94.1583 | 92.1965 | 96.2054 | 74.5165 | 319 | 27 | 431 | 17 | 17 | 100.0000 | |
| bgallagher-sentieon | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 93.7925 | 91.4973 | 96.2058 | 58.9950 | 2206 | 205 | 2206 | 87 | 83 | 95.4023 | |
| gduggal-snapfb | INDEL | D1_5 | map_l100_m1_e0 | * | 96.1820 | 96.1580 | 96.2060 | 83.7201 | 1777 | 71 | 1775 | 70 | 12 | 17.1429 | |
| asubramanian-gatk | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 97.7920 | 99.4303 | 96.2068 | 45.3054 | 10298 | 59 | 10906 | 430 | 320 | 74.4186 | |
| gduggal-bwaplat | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 76.7538 | 63.8444 | 96.2069 | 68.5125 | 279 | 158 | 279 | 11 | 11 | 100.0000 | |
| rpoplin-dv42 | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 91.2661 | 86.8078 | 96.2071 | 67.4824 | 1599 | 243 | 1598 | 63 | 54 | 85.7143 | |
| gduggal-snapplat | INDEL | * | map_l100_m2_e0 | homalt | 84.9002 | 75.9715 | 96.2072 | 87.8170 | 958 | 303 | 1040 | 41 | 2 | 4.8781 | |
| eyeh-varpipe | INDEL | * | map_l150_m0_e0 | het | 96.4901 | 96.7742 | 96.2076 | 90.4879 | 330 | 11 | 482 | 19 | 8 | 42.1053 | |