PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
50951-51000 / 86044 show all | |||||||||||||||
| bgallagher-sentieon | INDEL | D16_PLUS | * | het | 97.5876 | 99.3036 | 95.9298 | 78.0298 | 3137 | 22 | 2899 | 123 | 76 | 61.7886 | |
| jli-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | * | 84.9428 | 76.2136 | 95.9302 | 45.5696 | 157 | 49 | 165 | 7 | 7 | 100.0000 | |
| ckim-dragen | SNP | tv | map_l250_m1_e0 | het | 96.1474 | 96.3626 | 95.9331 | 90.7498 | 1722 | 65 | 1722 | 73 | 4 | 5.4795 | |
| hfeng-pmm2 | INDEL | D1_5 | map_l150_m2_e1 | het | 97.4630 | 99.0421 | 95.9335 | 89.6756 | 517 | 5 | 519 | 22 | 2 | 9.0909 | |
| egarrison-hhga | INDEL | I6_15 | * | homalt | 96.9232 | 97.9324 | 95.9347 | 48.1653 | 6110 | 129 | 6112 | 259 | 222 | 85.7143 | |
| ckim-isaac | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | * | 84.2857 | 75.1592 | 95.9350 | 54.2751 | 118 | 39 | 118 | 5 | 2 | 40.0000 | |
| ckim-gatk | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 95.9513 | 95.9677 | 95.9350 | 99.9185 | 119 | 5 | 118 | 5 | 0 | 0.0000 | |
| qzeng-custom | SNP | ti | map_l100_m0_e0 | het | 81.5587 | 70.9290 | 95.9360 | 86.8580 | 9918 | 4065 | 9891 | 419 | 349 | 83.2936 | |
| gduggal-snapplat | SNP | ti | map_l100_m0_e0 | * | 93.4813 | 91.1488 | 95.9364 | 78.9527 | 19844 | 1927 | 19855 | 841 | 482 | 57.3127 | |
| jlack-gatk | SNP | ti | map_l100_m2_e0 | * | 97.4962 | 99.1075 | 95.9365 | 74.4561 | 48524 | 437 | 48517 | 2055 | 194 | 9.4404 | |
| astatham-gatk | INDEL | D1_5 | map_l150_m2_e1 | het | 95.2826 | 94.6360 | 95.9381 | 90.5225 | 494 | 28 | 496 | 21 | 3 | 14.2857 | |
| qzeng-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | het | 96.4259 | 96.9186 | 95.9382 | 41.0474 | 1321 | 42 | 12117 | 513 | 483 | 94.1520 | |
| jmaeng-gatk | SNP | * | map_l250_m1_e0 | het | 72.0683 | 57.7077 | 95.9441 | 96.8258 | 2744 | 2011 | 2744 | 116 | 8 | 6.8966 | |
| mlin-fermikit | INDEL | * | tech_badpromoters | * | 94.6667 | 93.4211 | 95.9459 | 50.0000 | 71 | 5 | 71 | 3 | 3 | 100.0000 | |
| ckim-dragen | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | * | 95.3020 | 94.6667 | 95.9459 | 62.8141 | 71 | 4 | 71 | 3 | 2 | 66.6667 | |
| jli-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | * | 95.3020 | 94.6667 | 95.9459 | 58.6592 | 71 | 4 | 71 | 3 | 2 | 66.6667 | |
| ckim-isaac | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 60.4255 | 44.0994 | 95.9459 | 40.8000 | 71 | 90 | 71 | 3 | 3 | 100.0000 | |
| dgrover-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | * | 95.3020 | 94.6667 | 95.9459 | 64.9289 | 71 | 4 | 71 | 3 | 2 | 66.6667 | |
| ckim-vqsr | INDEL | D6_15 | map_l150_m1_e0 | * | 96.5986 | 97.2603 | 95.9459 | 94.3164 | 71 | 2 | 71 | 3 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | D1_5 | map_l150_m2_e0 | * | 96.0079 | 96.0682 | 95.9477 | 92.8545 | 733 | 30 | 734 | 31 | 4 | 12.9032 | |
| ckim-dragen | SNP | * | map_l250_m0_e0 | * | 96.2167 | 96.4871 | 95.9478 | 93.2896 | 2060 | 75 | 2060 | 87 | 9 | 10.3448 | |
| eyeh-varpipe | SNP | * | map_l150_m0_e0 | * | 97.7007 | 99.5180 | 95.9486 | 82.7662 | 11974 | 58 | 11652 | 492 | 15 | 3.0488 | |
| mlin-fermikit | INDEL | D1_5 | map_l100_m1_e0 | het | 75.8984 | 62.7792 | 95.9494 | 75.4582 | 759 | 450 | 758 | 32 | 18 | 56.2500 | |
| raldana-dualsentieon | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | het | 94.2802 | 92.6653 | 95.9524 | 80.0853 | 897 | 71 | 806 | 34 | 28 | 82.3529 | |
| ckim-vqsr | INDEL | D16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 95.6964 | 95.4417 | 95.9524 | 73.2314 | 2031 | 97 | 2015 | 85 | 77 | 90.5882 | |
| anovak-vg | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 95.6861 | 95.4198 | 95.9538 | 64.2562 | 500 | 24 | 498 | 21 | 15 | 71.4286 | |
| astatham-gatk | INDEL | * | map_l150_m0_e0 | * | 96.2251 | 96.4981 | 95.9538 | 92.9541 | 496 | 18 | 498 | 21 | 4 | 19.0476 | |
| ckim-gatk | SNP | * | map_l250_m1_e0 | het | 72.2025 | 57.8759 | 95.9554 | 96.7153 | 2752 | 2003 | 2752 | 116 | 9 | 7.7586 | |
| gduggal-bwafb | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 87.7499 | 80.8367 | 95.9562 | 58.8989 | 599 | 142 | 1139 | 48 | 25 | 52.0833 | |
| eyeh-varpipe | INDEL | I1_5 | map_siren | homalt | 96.7348 | 97.5248 | 95.9574 | 79.1173 | 1182 | 30 | 1353 | 57 | 49 | 85.9649 | |
| rpoplin-dv42 | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | het | 94.6833 | 93.4426 | 95.9574 | 81.3344 | 456 | 32 | 451 | 19 | 18 | 94.7368 | |
| eyeh-varpipe | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 97.7598 | 99.6310 | 95.9575 | 59.6872 | 2430 | 9 | 2350 | 99 | 7 | 7.0707 | |
| ckim-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 97.3424 | 98.7673 | 95.9581 | 68.3562 | 641 | 8 | 641 | 27 | 27 | 100.0000 | |
| gduggal-snapvard | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 96.4077 | 96.8613 | 95.9584 | 55.0491 | 27373 | 887 | 54846 | 2310 | 1901 | 82.2944 | |
| jlack-gatk | SNP | ti | map_l100_m2_e1 | * | 97.5095 | 99.1108 | 95.9591 | 74.4631 | 49045 | 440 | 49038 | 2065 | 195 | 9.4431 | |
| gduggal-bwafb | INDEL | D6_15 | map_l100_m0_e0 | * | 91.9974 | 88.3495 | 95.9596 | 87.8378 | 91 | 12 | 95 | 4 | 1 | 25.0000 | |
| gduggal-bwavard | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 91.4102 | 87.2727 | 95.9596 | 87.5628 | 96 | 14 | 95 | 4 | 3 | 75.0000 | |
| ckim-vqsr | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | het | 94.5274 | 93.1373 | 95.9596 | 92.6230 | 95 | 7 | 95 | 4 | 3 | 75.0000 | |
| rpoplin-dv42 | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | het | 95.0297 | 94.1176 | 95.9596 | 92.6174 | 96 | 6 | 95 | 4 | 3 | 75.0000 | |
| qzeng-custom | INDEL | I1_5 | map_l125_m0_e0 | het | 76.0780 | 63.0208 | 95.9596 | 95.2868 | 121 | 71 | 190 | 8 | 4 | 50.0000 | |
| raldana-dualsentieon | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 97.8473 | 99.8104 | 95.9599 | 54.4297 | 3159 | 6 | 3159 | 133 | 131 | 98.4962 | |
| ckim-gatk | INDEL | I1_5 | map_l100_m2_e0 | het | 97.1459 | 98.3607 | 95.9608 | 90.0195 | 780 | 13 | 784 | 33 | 1 | 3.0303 | |
| bgallagher-sentieon | INDEL | I16_PLUS | HG002complexvar | homalt | 97.9398 | 100.0000 | 95.9627 | 70.5667 | 309 | 0 | 309 | 13 | 13 | 100.0000 | |
| dgrover-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 96.7625 | 97.5758 | 95.9627 | 75.9522 | 322 | 8 | 309 | 13 | 7 | 53.8462 | |
| gduggal-bwaplat | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 77.7513 | 65.3494 | 95.9630 | 64.1921 | 2282 | 1210 | 2282 | 96 | 29 | 30.2083 | |
| ckim-dragen | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 97.5724 | 99.2360 | 95.9638 | 73.1297 | 1169 | 9 | 1165 | 49 | 49 | 100.0000 | |
| dgrover-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 97.4203 | 98.9214 | 95.9641 | 68.3987 | 642 | 7 | 642 | 27 | 27 | 100.0000 | |
| jmaeng-gatk | INDEL | * | map_l100_m2_e1 | * | 96.9607 | 97.9766 | 95.9656 | 89.2269 | 3680 | 76 | 3687 | 155 | 21 | 13.5484 | |
| dgrover-gatk | INDEL | D16_PLUS | HG002compoundhet | * | 95.7397 | 95.5147 | 95.9657 | 35.4749 | 2236 | 105 | 2236 | 94 | 91 | 96.8085 | |
| gduggal-snapfb | INDEL | D6_15 | map_l100_m1_e0 | het | 81.8995 | 71.4286 | 95.9677 | 75.3968 | 90 | 36 | 119 | 5 | 4 | 80.0000 | |