PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
50601-50650 / 86044 show all | |||||||||||||||
| rpoplin-dv42 | INDEL | I1_5 | map_l250_m2_e1 | homalt | 96.7742 | 97.8261 | 95.7447 | 95.0888 | 45 | 1 | 45 | 2 | 1 | 50.0000 | |
| bgallagher-sentieon | INDEL | I1_5 | map_l250_m2_e0 | homalt | 97.8261 | 100.0000 | 95.7447 | 94.7250 | 45 | 0 | 45 | 2 | 2 | 100.0000 | |
| astatham-gatk | INDEL | D6_15 | segdup | het | 96.7742 | 97.8261 | 95.7447 | 95.1621 | 90 | 2 | 90 | 4 | 0 | 0.0000 | |
| astatham-gatk | INDEL | I1_5 | map_l250_m2_e0 | homalt | 97.8261 | 100.0000 | 95.7447 | 94.8408 | 45 | 0 | 45 | 2 | 2 | 100.0000 | |
| ltrigg-rtg2 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 81.6591 | 71.1864 | 95.7447 | 71.8563 | 42 | 17 | 45 | 2 | 2 | 100.0000 | |
| jmaeng-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 97.8261 | 100.0000 | 95.7447 | 83.3333 | 45 | 0 | 45 | 2 | 2 | 100.0000 | |
| jmaeng-gatk | INDEL | I1_5 | map_l250_m2_e1 | homalt | 96.7742 | 97.8261 | 95.7447 | 95.0370 | 45 | 1 | 45 | 2 | 2 | 100.0000 | |
| ltrigg-rtg1 | INDEL | I1_5 | map_l250_m2_e0 | homalt | 97.8261 | 100.0000 | 95.7447 | 94.7894 | 45 | 0 | 45 | 2 | 1 | 50.0000 | |
| hfeng-pmm1 | INDEL | I1_5 | map_l250_m2_e0 | homalt | 97.8261 | 100.0000 | 95.7447 | 94.3713 | 45 | 0 | 45 | 2 | 2 | 100.0000 | |
| hfeng-pmm3 | INDEL | I1_5 | map_l250_m2_e0 | homalt | 97.8261 | 100.0000 | 95.7447 | 93.9666 | 45 | 0 | 45 | 2 | 2 | 100.0000 | |
| hfeng-pmm2 | INDEL | I1_5 | map_l250_m2_e0 | homalt | 97.8261 | 100.0000 | 95.7447 | 94.2892 | 45 | 0 | 45 | 2 | 2 | 100.0000 | |
| jli-custom | INDEL | I1_5 | map_l250_m2_e0 | homalt | 97.8261 | 100.0000 | 95.7447 | 94.2822 | 45 | 0 | 45 | 2 | 2 | 100.0000 | |
| jmaeng-gatk | INDEL | I6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 97.8277 | 100.0000 | 95.7478 | 73.3906 | 653 | 0 | 653 | 29 | 28 | 96.5517 | |
| qzeng-custom | INDEL | D1_5 | map_l150_m1_e0 | * | 84.3978 | 75.4533 | 95.7480 | 93.2533 | 541 | 176 | 608 | 27 | 23 | 85.1852 | |
| qzeng-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 92.6329 | 89.7120 | 95.7505 | 61.0009 | 14423 | 1654 | 21721 | 964 | 836 | 86.7220 | |
| qzeng-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 92.6329 | 89.7120 | 95.7505 | 61.0009 | 14423 | 1654 | 21721 | 964 | 836 | 86.7220 | |
| ckim-gatk | INDEL | D16_PLUS | HG002compoundhet | * | 95.5256 | 95.3012 | 95.7511 | 35.3496 | 2231 | 110 | 2231 | 99 | 96 | 96.9697 | |
| gduggal-snapfb | SNP | tv | map_l100_m1_e0 | het | 97.0635 | 98.4108 | 95.7526 | 68.5715 | 15172 | 245 | 15172 | 673 | 223 | 33.1352 | |
| ghariani-varprowl | SNP | * | map_l125_m1_e0 | het | 97.3202 | 98.9398 | 95.7528 | 78.2919 | 28091 | 301 | 28091 | 1246 | 234 | 18.7801 | |
| gduggal-snapplat | SNP | ti | map_l100_m2_e1 | het | 95.5522 | 95.3521 | 95.7532 | 80.1277 | 29521 | 1439 | 29559 | 1311 | 671 | 51.1823 | |
| eyeh-varpipe | INDEL | I6_15 | * | hetalt | 42.6506 | 27.4354 | 95.7540 | 48.5714 | 2346 | 6205 | 2413 | 107 | 106 | 99.0654 | |
| gduggal-bwafb | INDEL | * | func_cds | het | 94.3524 | 92.9907 | 95.7547 | 43.4667 | 199 | 15 | 203 | 9 | 7 | 77.7778 | |
| hfeng-pmm1 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 97.3621 | 99.0244 | 95.7547 | 90.6402 | 203 | 2 | 203 | 9 | 7 | 77.7778 | |
| cchapple-custom | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 94.7108 | 93.6893 | 95.7547 | 87.1903 | 193 | 13 | 203 | 9 | 7 | 77.7778 | |
| hfeng-pmm1 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 97.3621 | 99.0244 | 95.7547 | 90.6402 | 203 | 2 | 203 | 9 | 7 | 77.7778 | |
| jli-custom | INDEL | * | map_l250_m2_e0 | het | 96.2085 | 96.6667 | 95.7547 | 95.7137 | 203 | 7 | 203 | 9 | 2 | 22.2222 | |
| ghariani-varprowl | SNP | * | map_l125_m2_e0 | het | 97.3365 | 98.9699 | 95.7561 | 79.6531 | 29016 | 302 | 29016 | 1286 | 236 | 18.3515 | |
| jlack-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 92.1283 | 88.7640 | 95.7576 | 73.0832 | 158 | 20 | 158 | 7 | 7 | 100.0000 | |
| jlack-gatk | SNP | tv | segdup | * | 97.7319 | 99.7890 | 95.7578 | 94.5195 | 8514 | 18 | 8510 | 377 | 7 | 1.8568 | |
| dgrover-gatk | INDEL | I16_PLUS | * | homalt | 97.7415 | 99.8078 | 95.7591 | 72.2497 | 1558 | 3 | 1558 | 69 | 66 | 95.6522 | |
| ckim-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 97.7654 | 99.8573 | 95.7592 | 54.7998 | 2800 | 4 | 2800 | 124 | 123 | 99.1935 | |
| dgrover-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 97.7832 | 99.8930 | 95.7607 | 54.8681 | 2801 | 3 | 2801 | 124 | 124 | 100.0000 | |
| astatham-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 97.7832 | 99.8930 | 95.7607 | 54.7214 | 2801 | 3 | 2801 | 124 | 124 | 100.0000 | |
| gduggal-snapfb | INDEL | I1_5 | HG002complexvar | homalt | 96.0286 | 96.2968 | 95.7618 | 50.6870 | 12950 | 498 | 12992 | 575 | 251 | 43.6522 | |
| hfeng-pmm2 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 92.2449 | 88.9764 | 95.7627 | 76.5408 | 113 | 14 | 113 | 5 | 4 | 80.0000 | |
| qzeng-custom | INDEL | I1_5 | map_l125_m2_e0 | het | 77.9993 | 65.7948 | 95.7627 | 93.1215 | 327 | 170 | 452 | 20 | 9 | 45.0000 | |
| ckim-gatk | INDEL | D6_15 | map_l125_m1_e0 | * | 96.1702 | 96.5812 | 95.7627 | 92.6980 | 113 | 4 | 113 | 5 | 1 | 20.0000 | |
| ckim-gatk | INDEL | * | map_l100_m2_e0 | * | 97.0660 | 98.4024 | 95.7654 | 89.0665 | 3634 | 59 | 3641 | 161 | 20 | 12.4224 | |
| jlack-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 94.9671 | 94.1821 | 95.7654 | 49.5027 | 12983 | 802 | 12981 | 574 | 528 | 91.9861 | |
| ltrigg-rtg2 | INDEL | D6_15 | HG002complexvar | hetalt | 94.0012 | 92.3001 | 95.7661 | 55.0113 | 935 | 78 | 950 | 42 | 42 | 100.0000 | |
| gduggal-snapfb | SNP | tv | map_l250_m0_e0 | homalt | 94.7644 | 93.7824 | 95.7672 | 97.4314 | 181 | 12 | 181 | 8 | 3 | 37.5000 | |
| eyeh-varpipe | INDEL | C1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 78.6102 | 66.6667 | 95.7672 | 95.4210 | 2 | 1 | 362 | 16 | 4 | 25.0000 | |
| egarrison-hhga | INDEL | * | map_l250_m1_e0 | het | 95.5145 | 95.2632 | 95.7672 | 95.8815 | 181 | 9 | 181 | 8 | 2 | 25.0000 | |
| jmaeng-gatk | INDEL | I1_5 | map_l150_m1_e0 | * | 96.8834 | 98.0237 | 95.7692 | 92.4077 | 496 | 10 | 498 | 22 | 3 | 13.6364 | |
| bgallagher-sentieon | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 95.8013 | 95.8333 | 95.7692 | 80.3625 | 276 | 12 | 249 | 11 | 8 | 72.7273 | |
| gduggal-bwaplat | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 76.0853 | 63.1134 | 95.7692 | 72.6027 | 746 | 436 | 747 | 33 | 30 | 90.9091 | |
| gduggal-bwafb | INDEL | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 96.5493 | 97.3408 | 95.7705 | 73.5567 | 29943 | 818 | 29935 | 1322 | 1296 | 98.0333 | |
| rpoplin-dv42 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 89.3483 | 83.7325 | 95.7714 | 64.0509 | 839 | 163 | 838 | 37 | 35 | 94.5946 | |
| ckim-gatk | INDEL | D16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 95.6301 | 95.4887 | 95.7720 | 73.1847 | 2032 | 96 | 2016 | 89 | 78 | 87.6404 | |
| gduggal-snapplat | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 52.8724 | 36.5157 | 95.7721 | 51.7559 | 2597 | 4515 | 2605 | 115 | 100 | 86.9565 | |