PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
49801-49850 / 86044 show all | |||||||||||||||
| hfeng-pmm1 | INDEL | D1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 97.8913 | 95.8799 | 99.9888 | 64.9301 | 8913 | 383 | 8932 | 1 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | * | 95.3020 | 94.6667 | 95.9459 | 64.9289 | 71 | 4 | 71 | 3 | 2 | 66.6667 | |
| hfeng-pmm2 | SNP | tv | map_l100_m2_e1 | homalt | 99.8549 | 99.8602 | 99.8495 | 64.9261 | 9289 | 13 | 9289 | 14 | 5 | 35.7143 | |
| gduggal-snapplat | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 55.0977 | 41.6888 | 81.2222 | 64.9260 | 1570 | 2196 | 1462 | 338 | 247 | 73.0769 | |
| gduggal-snapplat | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 55.0977 | 41.6888 | 81.2222 | 64.9260 | 1570 | 2196 | 1462 | 338 | 247 | 73.0769 | |
| ndellapenna-hhga | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 96.7116 | 95.4096 | 98.0496 | 64.9238 | 15339 | 738 | 15333 | 305 | 176 | 57.7049 | |
| ndellapenna-hhga | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 96.7116 | 95.4096 | 98.0496 | 64.9238 | 15339 | 738 | 15333 | 305 | 176 | 57.7049 | |
| hfeng-pmm2 | SNP | tv | map_l100_m2_e0 | homalt | 99.8535 | 99.8589 | 99.8481 | 64.9206 | 9201 | 13 | 9201 | 14 | 5 | 35.7143 | |
| jmaeng-gatk | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | * | 95.4191 | 94.1441 | 96.7290 | 64.9180 | 209 | 13 | 207 | 7 | 5 | 71.4286 | |
| anovak-vg | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 97.5318 | 97.5161 | 97.5474 | 64.9131 | 2120 | 54 | 2108 | 53 | 24 | 45.2830 | |
| asubramanian-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 97.4359 | 95.0000 | 100.0000 | 64.9123 | 19 | 1 | 20 | 0 | 0 | ||
| astatham-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 64.9123 | 20 | 0 | 20 | 0 | 0 | ||
| egarrison-hhga | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 98.2614 | 98.8372 | 97.6923 | 64.9123 | 255 | 3 | 254 | 6 | 5 | 83.3333 | |
| gduggal-bwafb | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 16.6887 | 9.4737 | 70.0000 | 64.9123 | 9 | 86 | 14 | 6 | 6 | 100.0000 | |
| eyeh-varpipe | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 100.0000 | 100.0000 | 100.0000 | 64.9123 | 1 | 0 | 160 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | * | 77.5367 | 69.6429 | 87.4488 | 64.9114 | 1248 | 544 | 1282 | 184 | 127 | 69.0217 | |
| rpoplin-dv42 | SNP | tv | map_l100_m2_e1 | homalt | 99.5691 | 99.3550 | 99.7841 | 64.9074 | 9242 | 60 | 9242 | 20 | 18 | 90.0000 | |
| jmaeng-gatk | INDEL | I16_PLUS | HG002complexvar | het | 99.0895 | 98.1955 | 100.0000 | 64.9055 | 653 | 12 | 631 | 0 | 0 | ||
| raldana-dualsentieon | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 98.1509 | 97.0356 | 99.2922 | 64.9042 | 1964 | 60 | 1964 | 14 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | * | 97.2603 | 94.6667 | 100.0000 | 64.9038 | 71 | 4 | 73 | 0 | 0 | ||
| astatham-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 98.0605 | 98.0859 | 98.0352 | 64.9002 | 1896 | 37 | 1896 | 38 | 35 | 92.1053 | |
| gduggal-bwavard | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 97.8252 | 97.9371 | 97.7135 | 64.8985 | 3798 | 80 | 3718 | 87 | 10 | 11.4943 | |
| ltrigg-rtg2 | SNP | tv | map_l150_m2_e1 | * | 98.6899 | 97.5830 | 99.8222 | 64.8925 | 11224 | 278 | 11226 | 20 | 2 | 10.0000 | |
| rpoplin-dv42 | SNP | tv | map_l100_m2_e0 | homalt | 99.5649 | 99.3488 | 99.7820 | 64.8909 | 9154 | 60 | 9154 | 20 | 18 | 90.0000 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 98.9599 | 98.1796 | 99.7528 | 64.8872 | 809 | 15 | 807 | 2 | 1 | 50.0000 | |
| jli-custom | SNP | ti | map_l125_m0_e0 | homalt | 99.5980 | 99.3097 | 99.8880 | 64.8868 | 4460 | 31 | 4460 | 5 | 5 | 100.0000 | |
| ltrigg-rtg1 | SNP | ti | map_l125_m2_e0 | * | 99.1183 | 98.4500 | 99.7957 | 64.8854 | 29789 | 469 | 29791 | 61 | 19 | 31.1475 | |
| jli-custom | SNP | * | map_l100_m2_e1 | het | 99.2878 | 99.1428 | 99.4333 | 64.8837 | 46496 | 402 | 46493 | 265 | 62 | 23.3962 | |
| ghariani-varprowl | INDEL | D16_PLUS | HG002complexvar | het | 84.6320 | 90.1536 | 79.7478 | 64.8768 | 998 | 109 | 1012 | 257 | 243 | 94.5525 | |
| rpoplin-dv42 | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 99.8773 | 99.7549 | 100.0000 | 64.8765 | 1221 | 3 | 1223 | 0 | 0 | ||
| egarrison-hhga | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 80.9329 | 94.5455 | 70.7469 | 64.8688 | 312 | 18 | 341 | 141 | 126 | 89.3617 | |
| ckim-vqsr | INDEL | I16_PLUS | HG002complexvar | het | 98.7823 | 97.5940 | 100.0000 | 64.8679 | 649 | 16 | 625 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 71.9133 | 95.0643 | 57.8299 | 64.8667 | 13078 | 679 | 12962 | 9452 | 8806 | 93.1655 | |
| gduggal-bwavard | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 71.9133 | 95.0643 | 57.8299 | 64.8667 | 13078 | 679 | 12962 | 9452 | 8806 | 93.1655 | |
| ndellapenna-hhga | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 89.6468 | 92.1537 | 87.2727 | 64.8656 | 1151 | 98 | 1152 | 168 | 98 | 58.3333 | |
| ndellapenna-hhga | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 89.6468 | 92.1537 | 87.2727 | 64.8656 | 1151 | 98 | 1152 | 168 | 98 | 58.3333 | |
| rpoplin-dv42 | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 100.0000 | 100.0000 | 100.0000 | 64.8649 | 13 | 0 | 13 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 100.0000 | 100.0000 | 100.0000 | 64.8649 | 13 | 0 | 13 | 0 | 0 | ||
| gduggal-bwafb | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 88.8681 | 82.6087 | 96.1538 | 64.8649 | 76 | 16 | 75 | 3 | 3 | 100.0000 | |
| gduggal-bwaplat | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 100.0000 | 100.0000 | 100.0000 | 64.8649 | 13 | 0 | 13 | 0 | 0 | ||
| asubramanian-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 0.0000 | 0.0000 | 53.8462 | 64.8649 | 0 | 0 | 7 | 6 | 6 | 100.0000 | |
| gduggal-snapplat | INDEL | D6_15 | HG002complexvar | het | 38.9411 | 26.8910 | 70.5590 | 64.8625 | 839 | 2281 | 568 | 237 | 24 | 10.1266 | |
| qzeng-custom | SNP | tv | map_l100_m0_e0 | homalt | 83.9304 | 72.9329 | 98.8335 | 64.8615 | 2805 | 1041 | 2796 | 33 | 33 | 100.0000 | |
| ciseli-custom | INDEL | I1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 79.7753 | 86.5705 | 73.9693 | 64.8607 | 3062 | 475 | 3032 | 1067 | 886 | 83.0366 | |
| ckim-dragen | SNP | tv | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 99.8358 | 99.8591 | 99.8124 | 64.8592 | 27639 | 39 | 27673 | 52 | 16 | 30.7692 | |
| ndellapenna-hhga | SNP | ti | map_l125_m1_e0 | homalt | 99.7415 | 99.5473 | 99.9364 | 64.8588 | 10995 | 50 | 10995 | 7 | 7 | 100.0000 | |
| hfeng-pmm3 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 96.3028 | 95.2767 | 97.3513 | 64.8567 | 4236 | 210 | 4190 | 114 | 109 | 95.6140 | |
| ciseli-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 90.5999 | 98.1413 | 84.1348 | 64.8517 | 2904 | 55 | 2922 | 551 | 27 | 4.9002 | |
| ltrigg-rtg2 | SNP | tv | map_l150_m2_e0 | * | 98.6727 | 97.5517 | 99.8198 | 64.8483 | 11077 | 278 | 11076 | 20 | 2 | 10.0000 | |
| gduggal-snapplat | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 37.1926 | 25.0079 | 72.5332 | 64.8432 | 1581 | 4741 | 1529 | 579 | 94 | 16.2349 | |