PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
49751-49800 / 86044 show all | |||||||||||||||
| hfeng-pmm3 | INDEL | D16_PLUS | HG002complexvar | * | 96.9227 | 95.0700 | 98.8491 | 64.9955 | 1562 | 81 | 1546 | 18 | 11 | 61.1111 | |
| astatham-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 93.4715 | 90.0200 | 97.1983 | 64.9943 | 902 | 100 | 902 | 26 | 23 | 88.4615 | |
| ltrigg-rtg2 | SNP | ti | lowcmp_SimpleRepeat_diTR_11to50 | het | 99.1764 | 99.1423 | 99.2106 | 64.9939 | 3121 | 27 | 3142 | 25 | 3 | 12.0000 | |
| dgrover-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 99.5325 | 99.7837 | 99.2826 | 64.9925 | 1384 | 3 | 1384 | 10 | 0 | 0.0000 | |
| raldana-dualsentieon | SNP | ti | map_l125_m0_e0 | homalt | 99.6205 | 99.3765 | 99.8657 | 64.9902 | 4463 | 28 | 4463 | 6 | 5 | 83.3333 | |
| raldana-dualsentieon | SNP | ti | map_l125_m2_e1 | homalt | 99.7684 | 99.6160 | 99.9212 | 64.9891 | 11414 | 44 | 11414 | 9 | 8 | 88.8889 | |
| ltrigg-rtg1 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 97.5059 | 95.7223 | 99.3573 | 64.9865 | 1544 | 69 | 1546 | 10 | 1 | 10.0000 | |
| egarrison-hhga | INDEL | I16_PLUS | HG002complexvar | * | 92.4901 | 89.3812 | 95.8231 | 64.9842 | 1170 | 139 | 1170 | 51 | 30 | 58.8235 | |
| jpowers-varprowl | SNP | ti | map_l100_m2_e0 | homalt | 99.4381 | 99.0770 | 99.8019 | 64.9829 | 18140 | 169 | 18140 | 36 | 28 | 77.7778 | |
| mlin-fermikit | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 91.2206 | 93.2203 | 89.3048 | 64.9813 | 165 | 12 | 167 | 20 | 20 | 100.0000 | |
| gduggal-snapfb | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 51.8064 | 59.5808 | 45.8266 | 64.9803 | 597 | 405 | 571 | 675 | 121 | 17.9259 | |
| jlack-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 97.8832 | 99.4000 | 96.4120 | 64.9755 | 18057 | 109 | 18057 | 672 | 654 | 97.3214 | |
| jlack-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 97.8832 | 99.4000 | 96.4120 | 64.9755 | 18057 | 109 | 18057 | 672 | 654 | 97.3214 | |
| gduggal-bwaplat | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 81.7312 | 69.6640 | 98.8549 | 64.9750 | 4230 | 1842 | 4230 | 49 | 43 | 87.7551 | |
| qzeng-custom | SNP | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 99.0366 | 99.3834 | 98.6923 | 64.9734 | 55288 | 343 | 55243 | 732 | 105 | 14.3443 | |
| gduggal-bwavard | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 47.7941 | 75.5844 | 34.9456 | 64.9725 | 291 | 94 | 289 | 538 | 478 | 88.8476 | |
| ghariani-varprowl | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 52.0817 | 37.5305 | 85.0613 | 64.9709 | 4310 | 7174 | 4299 | 755 | 639 | 84.6358 | |
| gduggal-bwavard | INDEL | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 46.9055 | 30.9190 | 97.1223 | 64.9698 | 683 | 1526 | 675 | 20 | 18 | 90.0000 | |
| ltrigg-rtg2 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 99.0291 | 98.0769 | 100.0000 | 64.9682 | 51 | 1 | 55 | 0 | 0 | ||
| ciseli-custom | SNP | tv | map_l100_m2_e0 | homalt | 89.1677 | 87.8120 | 90.5658 | 64.9670 | 8091 | 1123 | 8083 | 842 | 633 | 75.1781 | |
| hfeng-pmm1 | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 99.6721 | 99.3464 | 100.0000 | 64.9669 | 1216 | 8 | 1216 | 0 | 0 | ||
| ciseli-custom | SNP | tv | map_l100_m2_e1 | homalt | 89.1763 | 87.8306 | 90.5639 | 64.9644 | 8170 | 1132 | 8158 | 850 | 639 | 75.1765 | |
| gduggal-bwaplat | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 83.5380 | 73.1417 | 97.3796 | 64.9640 | 10814 | 3971 | 10814 | 291 | 228 | 78.3505 | |
| rpoplin-dv42 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 92.2581 | 85.6287 | 100.0000 | 64.9635 | 143 | 24 | 144 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | D16_PLUS | HG002complexvar | * | 96.9275 | 95.2526 | 98.6624 | 64.9632 | 1565 | 78 | 1549 | 21 | 10 | 47.6190 | |
| jpowers-varprowl | SNP | ti | map_l100_m2_e1 | homalt | 99.4410 | 99.0808 | 99.8039 | 64.9625 | 18324 | 170 | 18324 | 36 | 28 | 77.7778 | |
| eyeh-varpipe | SNP | ti | map_l100_m0_e0 | homalt | 99.8506 | 99.8328 | 99.8684 | 64.9624 | 7761 | 13 | 7590 | 10 | 5 | 50.0000 | |
| ghariani-varprowl | SNP | * | map_siren | het | 98.3861 | 99.3911 | 97.4013 | 64.9618 | 90437 | 554 | 90440 | 2413 | 303 | 12.5570 | |
| gduggal-snapplat | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 91.6132 | 84.5897 | 99.9088 | 64.9616 | 3288 | 599 | 3285 | 3 | 0 | 0.0000 | |
| raldana-dualsentieon | SNP | ti | map_l125_m2_e0 | homalt | 99.7663 | 99.6126 | 99.9205 | 64.9616 | 11314 | 44 | 11314 | 9 | 8 | 88.8889 | |
| jmaeng-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.8161 | 99.8620 | 99.7702 | 64.9597 | 2171 | 3 | 2171 | 5 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 98.1473 | 97.6302 | 98.6700 | 64.9578 | 15696 | 381 | 15802 | 213 | 56 | 26.2911 | |
| ltrigg-rtg2 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 98.1473 | 97.6302 | 98.6700 | 64.9578 | 15696 | 381 | 15802 | 213 | 56 | 26.2911 | |
| cchapple-custom | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 94.8610 | 91.4980 | 98.4807 | 64.9564 | 226 | 21 | 713 | 11 | 8 | 72.7273 | |
| ltrigg-rtg1 | SNP | ti | map_l125_m2_e1 | * | 99.1256 | 98.4625 | 99.7978 | 64.9540 | 30099 | 470 | 30102 | 61 | 19 | 31.1475 | |
| gduggal-bwaplat | INDEL | D6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 87.1382 | 78.3947 | 98.0769 | 64.9494 | 2852 | 786 | 2856 | 56 | 50 | 89.2857 | |
| gduggal-snapfb | INDEL | D1_5 | HG002compoundhet | * | 80.1461 | 78.4226 | 81.9472 | 64.9485 | 9595 | 2640 | 10454 | 2303 | 1568 | 68.0851 | |
| asubramanian-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 88.5246 | 100.0000 | 79.4118 | 64.9485 | 153 | 0 | 270 | 70 | 69 | 98.5714 | |
| ltrigg-rtg1 | SNP | tv | map_l150_m2_e0 | het | 98.3588 | 97.1042 | 99.6461 | 64.9467 | 7042 | 210 | 7040 | 25 | 4 | 16.0000 | |
| hfeng-pmm1 | SNP | tv | map_l100_m1_e0 | het | 99.4603 | 99.2216 | 99.7001 | 64.9458 | 15297 | 120 | 15293 | 46 | 12 | 26.0870 | |
| qzeng-custom | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 98.3268 | 99.3263 | 97.3471 | 64.9445 | 1327 | 9 | 1321 | 36 | 3 | 8.3333 | |
| ckim-isaac | INDEL | * | HG002compoundhet | het | 56.9247 | 80.6302 | 43.9912 | 64.9439 | 3301 | 793 | 2405 | 3062 | 2738 | 89.4187 | |
| ckim-dragen | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 93.3973 | 93.3232 | 93.4716 | 64.9435 | 1230 | 88 | 1217 | 85 | 81 | 95.2941 | |
| bgallagher-sentieon | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 92.6448 | 88.6228 | 97.0492 | 64.9425 | 888 | 114 | 888 | 27 | 24 | 88.8889 | |
| ltrigg-rtg1 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 97.4933 | 95.4980 | 99.5739 | 64.9402 | 700 | 33 | 701 | 3 | 3 | 100.0000 | |
| gduggal-bwaplat | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 85.2919 | 75.6705 | 97.7165 | 64.9393 | 8690 | 2794 | 8687 | 203 | 174 | 85.7143 | |
| hfeng-pmm2 | INDEL | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 96.5254 | 97.4649 | 95.6039 | 64.9385 | 2153 | 56 | 2153 | 99 | 92 | 92.9293 | |
| astatham-gatk | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | * | 96.1232 | 95.4955 | 96.7593 | 64.9351 | 212 | 10 | 209 | 7 | 4 | 57.1429 | |
| ckim-isaac | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 83.4392 | 72.4958 | 98.2739 | 64.9314 | 854 | 324 | 854 | 15 | 14 | 93.3333 | |
| ckim-isaac | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | het | 80.4772 | 76.5586 | 84.8185 | 64.9306 | 307 | 94 | 257 | 46 | 29 | 63.0435 | |