PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
49601-49650 / 86044 show all | |||||||||||||||
| gduggal-snapplat | INDEL | * | func_cds | het | 59.9589 | 51.8692 | 71.0383 | 65.2751 | 111 | 103 | 130 | 53 | 0 | 0.0000 | |
| asubramanian-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 99.5315 | 99.5674 | 99.4957 | 65.2740 | 1381 | 6 | 1381 | 7 | 0 | 0.0000 | |
| gduggal-bwaplat | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 80.0966 | 67.4532 | 98.5731 | 65.2719 | 2487 | 1200 | 2487 | 36 | 21 | 58.3333 | |
| jli-custom | INDEL | D16_PLUS | * | * | 98.0920 | 97.4499 | 98.7427 | 65.2664 | 6611 | 173 | 6597 | 84 | 63 | 75.0000 | |
| hfeng-pmm1 | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 97.9089 | 96.2533 | 99.6225 | 65.2640 | 2903 | 113 | 2903 | 11 | 0 | 0.0000 | |
| bgallagher-sentieon | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 99.2753 | 99.1071 | 99.4439 | 65.2571 | 3219 | 29 | 3219 | 18 | 4 | 22.2222 | |
| jlack-gatk | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 99.0453 | 99.0148 | 99.0758 | 65.2537 | 3216 | 32 | 3216 | 30 | 7 | 23.3333 | |
| hfeng-pmm1 | SNP | ti | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 99.9407 | 99.8815 | 100.0000 | 65.2514 | 1686 | 2 | 1686 | 0 | 0 | ||
| dgrover-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 93.5818 | 90.2196 | 97.2043 | 65.2466 | 904 | 98 | 904 | 26 | 23 | 88.4615 | |
| jpowers-varprowl | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 45.6818 | 35.2014 | 65.0485 | 65.2418 | 201 | 370 | 201 | 108 | 80 | 74.0741 | |
| jli-custom | INDEL | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 95.3347 | 93.7357 | 96.9893 | 65.2412 | 9442 | 631 | 9310 | 289 | 255 | 88.2353 | |
| ciseli-custom | SNP | ti | map_l125_m1_e0 | homalt | 88.5271 | 87.3246 | 89.7632 | 65.2408 | 9645 | 1400 | 9628 | 1098 | 891 | 81.1475 | |
| mlin-fermikit | SNP | * | map_l125_m2_e0 | het | 61.8597 | 45.1531 | 98.1895 | 65.2404 | 13238 | 16080 | 13233 | 244 | 8 | 3.2787 | |
| jli-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.3103 | 100.0000 | 98.6301 | 65.2381 | 216 | 0 | 216 | 3 | 3 | 100.0000 | |
| ltrigg-rtg2 | INDEL | I1_5 | HG002compoundhet | * | 98.0840 | 96.8760 | 99.3225 | 65.2361 | 11970 | 386 | 11875 | 81 | 56 | 69.1358 | |
| egarrison-hhga | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 87.7109 | 81.5789 | 94.8396 | 65.2279 | 682 | 154 | 680 | 37 | 31 | 83.7838 | |
| cchapple-custom | INDEL | D1_5 | HG002compoundhet | het | 97.4821 | 96.0069 | 99.0033 | 65.2258 | 1659 | 69 | 12417 | 125 | 120 | 96.0000 | |
| gduggal-bwaplat | INDEL | D6_15 | * | * | 86.9684 | 78.1121 | 98.0899 | 65.2244 | 20381 | 5711 | 20387 | 397 | 273 | 68.7657 | |
| mlin-fermikit | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 69.0769 | 53.9474 | 96.0000 | 65.2241 | 205 | 175 | 216 | 9 | 8 | 88.8889 | |
| ltrigg-rtg1 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 97.6725 | 96.5079 | 98.8655 | 65.2198 | 608 | 22 | 610 | 7 | 1 | 14.2857 | |
| ckim-dragen | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 92.6613 | 88.2236 | 97.5691 | 65.2191 | 884 | 118 | 883 | 22 | 22 | 100.0000 | |
| hfeng-pmm2 | INDEL | D16_PLUS | HG002complexvar | * | 96.3580 | 94.4005 | 98.3985 | 65.2184 | 1551 | 92 | 1536 | 25 | 15 | 60.0000 | |
| ciseli-custom | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 0.0000 | 0.0000 | 65.2174 | 0 | 1 | 0 | 8 | 2 | 25.0000 | ||
| ciseli-custom | SNP | * | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 0.0000 | 0.0000 | 65.2174 | 0 | 1 | 0 | 8 | 2 | 25.0000 | ||
| gduggal-bwaplat | SNP | ti | tech_badpromoters | het | 92.8571 | 88.6364 | 97.5000 | 65.2174 | 39 | 5 | 39 | 1 | 0 | 0.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 52.5424 | 36.0465 | 96.8750 | 65.2174 | 62 | 110 | 62 | 2 | 2 | 100.0000 | |
| gduggal-snapfb | INDEL | D1_5 | tech_badpromoters | het | 93.3333 | 87.5000 | 100.0000 | 65.2174 | 7 | 1 | 8 | 0 | 0 | ||
| raldana-dualsentieon | SNP | ti | map_l125_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 65.2174 | 24 | 0 | 24 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 90.6977 | 82.9787 | 100.0000 | 65.2174 | 39 | 8 | 40 | 0 | 0 | ||
| jpowers-varprowl | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 70.2222 | 65.2893 | 75.9615 | 65.2174 | 158 | 84 | 158 | 50 | 50 | 100.0000 | |
| jpowers-varprowl | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 98.5234 | 99.1268 | 97.9273 | 65.2174 | 6130 | 54 | 6142 | 130 | 33 | 25.3846 | |
| gduggal-snapvard | INDEL | C16_PLUS | HG002compoundhet | * | 0.0000 | 0.0000 | 6.2500 | 65.2174 | 0 | 0 | 1 | 15 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | C16_PLUS | HG002compoundhet | het | 0.0000 | 0.0000 | 6.2500 | 65.2174 | 0 | 0 | 1 | 15 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | I1_5 | HG002compoundhet | * | 96.1838 | 94.3347 | 98.1069 | 65.2150 | 11656 | 700 | 11660 | 225 | 222 | 98.6667 | |
| gduggal-bwafb | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 91.5601 | 89.5000 | 93.7173 | 65.2095 | 179 | 21 | 179 | 12 | 12 | 100.0000 | |
| asubramanian-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 97.3254 | 96.9477 | 97.7059 | 65.2032 | 1874 | 59 | 1874 | 44 | 43 | 97.7273 | |
| ndellapenna-hhga | SNP | * | map_l125_m1_e0 | homalt | 99.7333 | 99.5504 | 99.9169 | 65.2026 | 16829 | 76 | 16829 | 14 | 13 | 92.8571 | |
| ndellapenna-hhga | INDEL | I16_PLUS | HG002complexvar | hetalt | 90.3719 | 83.8806 | 97.9522 | 65.2019 | 281 | 54 | 287 | 6 | 3 | 50.0000 | |
| hfeng-pmm1 | INDEL | D16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 99.6156 | 99.4518 | 99.7800 | 65.1991 | 907 | 5 | 907 | 2 | 1 | 50.0000 | |
| ndellapenna-hhga | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 86.0038 | 78.1362 | 95.6332 | 65.1976 | 218 | 61 | 219 | 10 | 9 | 90.0000 | |
| gduggal-bwaplat | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 91.0595 | 83.5864 | 100.0000 | 65.1965 | 1156 | 227 | 1160 | 0 | 0 | ||
| jpowers-varprowl | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | het | 40.0511 | 70.7317 | 27.9343 | 65.1961 | 116 | 48 | 119 | 307 | 306 | 99.6743 | |
| jli-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.8131 | 100.0000 | 99.6269 | 65.1948 | 267 | 0 | 267 | 1 | 1 | 100.0000 | |
| ckim-dragen | SNP | ti | map_l150_m1_e0 | homalt | 99.4455 | 99.1129 | 99.7803 | 65.1947 | 7262 | 65 | 7267 | 16 | 15 | 93.7500 | |
| rpoplin-dv42 | SNP | * | map_l100_m2_e1 | * | 99.4091 | 99.2775 | 99.5411 | 65.1919 | 74197 | 540 | 74186 | 342 | 199 | 58.1871 | |
| hfeng-pmm3 | SNP | * | map_l100_m2_e1 | * | 99.6666 | 99.5946 | 99.7387 | 65.1913 | 74434 | 303 | 74423 | 195 | 31 | 15.8974 | |
| ltrigg-rtg2 | SNP | ti | map_l150_m0_e0 | * | 97.8455 | 95.9038 | 99.8675 | 65.1893 | 7539 | 322 | 7538 | 10 | 4 | 40.0000 | |
| hfeng-pmm3 | SNP | * | map_l100_m2_e0 | * | 99.6651 | 99.5917 | 99.7386 | 65.1842 | 73662 | 302 | 73651 | 193 | 31 | 16.0622 | |
| ghariani-varprowl | INDEL | I16_PLUS | HG002complexvar | * | 68.3069 | 62.1849 | 75.7660 | 65.1794 | 814 | 495 | 816 | 261 | 254 | 97.3180 | |
| jli-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 96.0000 | 100.0000 | 92.3077 | 65.1786 | 36 | 0 | 36 | 3 | 3 | 100.0000 | |