PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 988 989 990 991 992 993 994 995 996 ... 1720 1721 » 49551-49600 / 86044 show all
raldana-dualsentieon	INDEL	I16_PLUS	lowcmp_SimpleRepeat_quadTR_11to50	hetalt	97.0588	94.2857	100.0000	65.3527	165	10	167	0	0
hfeng-pmm1	SNP	*	map_l100_m2_e1	het	99.4258	99.1322	99.7211	65.3522	46491	407	46480	130	32	24.6154
anovak-vg	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	37.4335	27.0492	60.7595	65.3509	33	89	48	31	14	45.1613
egarrison-hhga	SNP	tv	map_l100_m2_e0	het	99.3093	98.8845	99.7379	65.3478	15601	176	15601	41	13	31.7073
ltrigg-rtg1	INDEL	*	lowcmp_SimpleRepeat_quadTR_51to200	*	95.6549	93.5593	97.8465	65.3460	2484	171	2499	55	26	47.2727
hfeng-pmm2	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	het	96.2533	95.0967	97.4383	65.3458	4228	218	4184	110	105	95.4545
jmaeng-gatk	INDEL	I16_PLUS	lowcmp_SimpleRepeat_quadTR_11to50	hetalt	96.7552	93.7143	100.0000	65.3445	164	11	166	0	0
raldana-dualsentieon	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331	*	99.0544	98.5583	99.5556	65.3417	30694	449	30694	137	9	6.5693
raldana-dualsentieon	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	*	99.0544	98.5583	99.5556	65.3417	30694	449	30694	137	9	6.5693
jpowers-varprowl	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	*	24.2451	16.1226	48.8616	65.3414	563	2929	558	584	571	97.7740
ndellapenna-hhga	SNP	ti	map_l100_m0_e0	*	99.0443	98.2959	99.8041	65.3402	21400	371	21401	42	25	59.5238
hfeng-pmm1	SNP	*	map_l100_m2_e0	het	99.4228	99.1250	99.7224	65.3363	45993	406	45982	128	32	25.0000
cchapple-custom	SNP	tv	map_l125_m2_e1	homalt	98.4366	96.9213	100.0000	65.3352	5887	187	5884	0	0
eyeh-varpipe	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	hetalt	26.6884	15.5852	92.8021	65.3298	257	1392	361	28	27	96.4286
jpowers-varprowl	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	het	53.6324	61.8056	47.3684	65.3285	178	110	180	200	197	98.5000
ckim-isaac	INDEL	*	lowcmp_AllRepeats_51to200bp_gt95identity_merged	het	79.5482	82.0297	77.2125	65.3284	3314	726	2914	860	707	82.2093
jpowers-varprowl	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	*	98.5827	98.8772	98.2900	65.3261	1321	15	1322	23	8	34.7826
jli-custom	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	het	97.9472	96.5318	99.4048	65.3251	334	12	334	2	0	0.0000
cchapple-custom	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	96.8750	100.0000	93.9394	65.3240	188	0	186	12	12	100.0000
ltrigg-rtg1	SNP	*	map_l100_m2_e1	hetalt	100.0000	100.0000	100.0000	65.3226	43	0	43	0	0
ltrigg-rtg1	SNP	tv	map_l100_m2_e1	hetalt	100.0000	100.0000	100.0000	65.3226	43	0	43	0	0
rpoplin-dv42	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	99.4175	99.2248	99.6109	65.3171	256	2	256	1	0	0.0000
mlin-fermikit	INDEL	I1_5	lowcmp_SimpleRepeat_homopolymer_6to10	*	97.9660	97.1407	98.8054	65.3168	2582	76	2564	31	30	96.7742
eyeh-varpipe	SNP	*	map_l100_m2_e1	homalt	99.8719	99.8597	99.8841	65.3160	27757	39	26718	31	16	51.6129
gduggal-bwaplat	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	hetalt	70.3704	55.0000	97.6636	65.3160	209	171	209	5	5	100.0000
gduggal-snapfb	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	het	46.7522	70.4861	34.9754	65.3140	203	85	284	528	66	12.5000
gduggal-snapfb	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	64.4853	99.1348	47.7839	65.3135	1375	12	1380	1508	7	0.4642
ckim-isaac	SNP	ti	lowcmp_AllRepeats_51to200bp_gt95identity_merged	het	94.1838	92.7372	95.6762	65.3122	1877	147	1903	86	6	6.9767
gduggal-bwavard	INDEL	I16_PLUS	*	*	58.4101	56.2490	60.7439	65.3100	3587	2790	3593	2322	1708	73.5573
hfeng-pmm2	SNP	ti	map_l100_m1_e0	*	99.5399	99.5410	99.5389	65.3094	47711	220	47704	221	30	13.5747
hfeng-pmm1	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331	het	98.8143	97.9008	99.7450	65.3085	19168	411	19168	49	0	0.0000
hfeng-pmm1	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het	98.8143	97.9008	99.7450	65.3085	19168	411	19168	49	0	0.0000
eyeh-varpipe	SNP	*	map_l100_m2_e0	homalt	99.8725	99.8583	99.8868	65.3085	27484	39	26466	30	16	53.3333
ckim-isaac	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	90.9091	93.7500	88.2353	65.3061	15	1	15	2	1	50.0000
rpoplin-dv42	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	hetalt	97.0588	94.2857	100.0000	65.3061	33	2	34	0	0
jpowers-varprowl	SNP	ti	map_l100_m0_e0	homalt	99.0013	98.1863	99.8300	65.3054	7633	141	7633	13	10	76.9231
raldana-dualsentieon	SNP	*	map_l125_m2_e1	homalt	99.7744	99.6350	99.9142	65.3032	17468	64	17468	15	11	73.3333
hfeng-pmm2	SNP	*	lowcmp_AllRepeats_51to200bp_gt95identity_merged	het	97.6573	96.0544	99.3146	65.3032	2897	119	2898	20	0	0.0000
ciseli-custom	SNP	tv	map_siren	het	84.4100	82.1595	86.7874	65.3031	23505	5104	23489	3576	93	2.6007
hfeng-pmm3	SNP	tv	map_l100_m0_e0	homalt	99.6488	99.6100	99.6877	65.3002	3831	15	3831	12	4	33.3333
ltrigg-rtg2	INDEL	I16_PLUS	lowcmp_SimpleRepeat_quadTR_11to50	*	91.8670	86.0825	98.4848	65.2997	334	54	325	5	4	80.0000
ckim-dragen	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	99.8217	99.8558	99.7875	65.2986	1385	2	1409	3	2	66.6667
ckim-isaac	SNP	*	map_l100_m2_e0	*	78.8251	65.1290	99.8156	65.2970	48172	25792	48179	89	22	24.7191
cchapple-custom	SNP	tv	map_l125_m2_e0	homalt	98.4215	96.8921	100.0000	65.2969	5830	187	5827	0	0
hfeng-pmm1	INDEL	D16_PLUS	lowcmp_SimpleRepeat_triTR_51to200	*	93.1818	89.1304	97.6190	65.2893	41	5	41	1	1	100.0000
rpoplin-dv42	SNP	tv	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	99.8491	99.8406	99.8576	65.2848	17540	28	17527	25	17	68.0000
raldana-dualsentieon	SNP	*	map_l125_m2_e0	homalt	99.7723	99.6317	99.9134	65.2834	17311	64	17311	15	11	73.3333
gduggal-bwaplat	INDEL	*	*	*	92.6621	87.0843	99.0034	65.2816	300042	44500	299917	3019	1851	61.3117
ckim-isaac	SNP	*	map_l100_m2_e1	*	78.8815	65.2060	99.8157	65.2814	48733	26004	48740	90	22	24.4444
anovak-vg	INDEL	I1_5	lowcmp_SimpleRepeat_homopolymer_6to10	*	59.0705	52.5583	67.4247	65.2810	1397	1261	3024	1461	1247	85.3525

PrecisionFDA Truth Challenge

PrecisionFDA
Truth Challenge