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Explore HG002 comparison results

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Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 962 963 964 965 966 967 968 969 970 ... 1720 1721 » 48251-48300 / 86044 show all
asubramanian-gatk	INDEL	I6_15	lowcmp_SimpleRepeat_quadTR_51to200	*	93.3929	89.2473	97.9424	67.1177	166	20	238	5	4	80.0000
jpowers-varprowl	INDEL	D16_PLUS	lowcmp_SimpleRepeat_diTR_11to50	het	56.9927	87.3563	42.2925	67.1172	532	77	535	730	725	99.3151
hfeng-pmm1	INDEL	I16_PLUS	lowcmp_SimpleRepeat_quadTR_11to50	hetalt	98.2558	96.5714	100.0000	67.1154	169	6	171	0	0
jmaeng-gatk	INDEL	I16_PLUS	HG002complexvar	*	98.2253	97.2498	99.2206	67.1110	1273	36	1273	10	9	90.0000
qzeng-custom	INDEL	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	97.3828	98.2445	96.5360	67.1067	30221	540	45147	1620	1222	75.4321
hfeng-pmm3	SNP	ti	lowcmp_AllRepeats_51to200bp_gt95identity_merged	*	98.8359	98.0296	99.6557	67.1059	3184	64	3184	11	0	0.0000
ltrigg-rtg1	INDEL	I1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.4898	99.2366	99.7443	67.0997	3510	27	3511	9	6	66.6667
hfeng-pmm1	INDEL	I1_5	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.4843	99.6244	99.3446	67.0980	1061	4	1061	7	7	100.0000
astatham-gatk	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	99.7947	99.7947	99.7947	67.0946	486	1	486	1	1	100.0000
hfeng-pmm3	SNP	tv	map_l100_m2_e0	het	99.5338	99.4803	99.5875	67.0941	15695	82	15691	65	5	7.6923
hfeng-pmm1	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331	*	99.2247	98.6289	99.8277	67.0916	30716	427	30716	53	3	5.6604
hfeng-pmm1	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	*	99.2247	98.6289	99.8277	67.0916	30716	427	30716	53	3	5.6604
raldana-dualsentieon	INDEL	I16_PLUS	*	*	96.7701	95.1388	98.4583	67.0904	6067	310	6067	95	85	89.4737
ltrigg-rtg1	INDEL	I16_PLUS	lowcmp_AllRepeats_lt51bp_gt95identity_merged	hetalt	86.9857	77.8731	98.5138	67.0860	454	129	464	7	7	100.0000
bgallagher-sentieon	SNP	*	map_l100_m2_e1	*	99.4314	99.5705	99.2927	67.0857	74416	321	74405	530	81	15.2830
raldana-dualsentieon	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	94.4724	100.0000	89.5238	67.0846	188	0	188	22	21	95.4545
raldana-dualsentieon	SNP	*	map_siren	hetalt	97.5000	96.2963	98.7342	67.0833	78	3	78	1	1	100.0000
raldana-dualsentieon	SNP	tv	map_siren	hetalt	97.5000	96.2963	98.7342	67.0833	78	3	78	1	1	100.0000
jli-custom	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	100.0000	100.0000	100.0000	67.0807	53	0	53	0	0
mlin-fermikit	INDEL	*	lowcmp_AllRepeats_51to200bp_gt95identity_merged	het	73.6558	85.1238	64.9109	67.0798	3439	601	3241	1752	1680	95.8904
bgallagher-sentieon	SNP	*	map_l100_m2_e0	*	99.4275	99.5674	99.2880	67.0766	73644	320	73633	528	81	15.3409
bgallagher-sentieon	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	99.8974	100.0000	99.7951	67.0715	487	0	487	1	1	100.0000
gduggal-bwaplat	INDEL	*	lowcmp_SimpleRepeat_triTR_11to50	het	76.9385	62.9306	98.9682	67.0678	2302	1356	2302	24	5	20.8333
ltrigg-rtg2	INDEL	D16_PLUS	lowcmp_SimpleRepeat_triTR_11to50	het	99.1736	98.3607	100.0000	67.0588	60	1	56	0	0
eyeh-varpipe	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	*	96.6942	99.6620	93.8981	67.0587	2949	10	2893	188	6	3.1915
hfeng-pmm3	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331	*	98.0795	96.5665	99.6406	67.0543	15525	552	15525	56	32	57.1429
hfeng-pmm3	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	*	98.0795	96.5665	99.6406	67.0543	15525	552	15525	56	32	57.1429
jpowers-varprowl	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	*	39.3470	36.3683	42.8571	67.0539	703	1230	705	940	934	99.3617
ghariani-varprowl	INDEL	D1_5	lowcmp_SimpleRepeat_triTR_51to200	*	18.8065	16.0000	22.8070	67.0520	12	63	13	44	41	93.1818
mlin-fermikit	INDEL	D16_PLUS	HG002complexvar	het	90.4295	87.7145	93.3180	67.0463	971	136	810	58	45	77.5862
bgallagher-sentieon	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331	*	97.9919	97.7475	98.2375	67.0385	63879	1472	63652	1142	1030	90.1926
bgallagher-sentieon	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	*	97.9919	97.7475	98.2375	67.0385	63879	1472	63652	1142	1030	90.1926
bgallagher-sentieon	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	98.0194	98.8917	97.1624	67.0369	14455	162	14073	411	388	94.4039
asubramanian-gatk	INDEL	I1_5	HG002compoundhet	*	95.2373	93.5902	96.9436	67.0365	11564	792	11577	365	350	95.8904
ckim-dragen	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	97.5150	99.6497	95.4698	67.0354	569	2	569	27	27	100.0000
egarrison-hhga	SNP	*	map_l100_m0_e0	*	99.3454	98.8977	99.7972	67.0353	32479	362	32480	66	33	50.0000
raldana-dualsentieon	INDEL	D16_PLUS	*	*	97.3178	96.6244	98.0213	67.0307	6555	229	6539	132	101	76.5152
dgrover-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	*	97.8920	97.5066	98.2804	67.0301	743	19	743	13	7	53.8462
mlin-fermikit	SNP	tv	map_l125_m2_e1	het	61.6520	44.9730	97.9955	67.0300	4746	5807	4742	97	1	1.0309
astatham-gatk	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	98.4375	99.2995	97.5904	67.0261	567	4	567	14	14	100.0000
jli-custom	INDEL	I1_5	lowcmp_SimpleRepeat_triTR_11to50	het	99.3590	98.9362	99.7854	67.0205	465	5	465	1	1	100.0000
dgrover-gatk	SNP	*	lowcmp_AllRepeats_51to200bp_gt95identity_merged	*	99.2427	99.0344	99.4519	67.0189	4718	46	4718	26	9	34.6154
jli-custom	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331	het	98.2104	98.0157	98.4058	67.0172	5730	116	5679	92	83	90.2174
jli-custom	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het	98.2104	98.0157	98.4058	67.0172	5730	116	5679	92	83	90.2174
ckim-dragen	INDEL	I16_PLUS	HG002complexvar	*	98.6149	97.9374	99.3018	67.0164	1282	27	1280	9	8	88.8889
cchapple-custom	SNP	tv	map_l150_m1_e0	homalt	98.3252	96.7055	100.0000	67.0155	3816	130	3814	0	0
mlin-fermikit	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	95.6348	93.9058	97.4286	67.0123	339	22	341	9	7	77.7778
ciseli-custom	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331	het	57.9068	46.9489	75.5372	67.0120	854	965	914	296	261	88.1757
ciseli-custom	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het	57.9068	46.9489	75.5372	67.0120	854	965	914	296	261	88.1757
jli-custom	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	het	98.3108	98.0414	98.5817	67.0115	17470	349	17099	246	203	82.5203

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