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Explore HG002 comparison results

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Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 960 961 962 963 964 965 966 967 968 ... 1720 1721 » 48151-48200 / 86044 show all
jmaeng-gatk	SNP	*	map_siren	*	94.0415	89.7742	98.7347	67.2383	131275	14953	131252	1682	121	7.1938
hfeng-pmm2	INDEL	I1_5	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.4848	99.7183	99.2523	67.2382	1062	3	1062	8	8	100.0000
dgrover-gatk	SNP	ti	map_l125_m0_e0	homalt	99.4074	98.9757	99.8428	67.2382	4445	46	4445	7	5	71.4286
astatham-gatk	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	98.1423	98.9601	97.3379	67.2353	14465	152	14077	385	358	92.9870
ghariani-varprowl	INDEL	I16_PLUS	HG002compoundhet	homalt	7.5000	100.0000	3.8961	67.2340	3	0	3	74	73	98.6486
qzeng-custom	SNP	ti	map_siren	het	92.2591	86.5538	98.7696	67.2335	53994	8388	53703	669	449	67.1151
hfeng-pmm2	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	homalt	98.0092	98.6133	97.4125	67.2319	640	9	640	17	17	100.0000
cchapple-custom	SNP	*	lowcmp_AllRepeats_51to200bp_gt95identity_merged	*	99.1597	98.9715	99.3486	67.2313	4715	49	4728	31	4	12.9032
ckim-vqsr	SNP	*	lowcmp_AllRepeats_51to200bp_gt95identity_merged	*	99.1361	98.7615	99.5135	67.2304	4705	59	4705	23	10	43.4783
ckim-dragen	INDEL	I16_PLUS	lowcmp_SimpleRepeat_quadTR_11to50	hetalt	99.4253	98.8571	100.0000	67.2285	173	2	175	0	0
egarrison-hhga	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	97.0711	95.0820	99.1453	67.2269	116	6	116	1	1	100.0000
dgrover-gatk	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	99.8974	100.0000	99.7951	67.2263	487	0	487	1	1	100.0000
raldana-dualsentieon	SNP	ti	map_l150_m1_e0	homalt	99.6923	99.4814	99.9041	67.2252	7289	38	7289	7	6	85.7143
jmaeng-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	*	97.8808	96.9816	98.7968	67.2217	739	23	739	9	5	55.5556
ckim-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	*	97.8218	97.2441	98.4064	67.2181	741	21	741	12	7	58.3333
rpoplin-dv42	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	97.7062	96.6942	98.7395	67.2176	234	8	235	3	2	66.6667
ndellapenna-hhga	INDEL	*	HG002complexvar	*	97.2866	96.6882	97.8924	67.2163	74390	2548	74363	1601	1150	71.8301
qzeng-custom	INDEL	I6_15	lowcmp_SimpleRepeat_homopolymer_6to10	*	62.0163	89.6774	47.3968	67.2160	139	16	264	293	16	5.4608
bgallagher-sentieon	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	98.3205	99.5404	97.1300	67.2155	1083	5	1083	32	26	81.2500
qzeng-custom	INDEL	D1_5	HG002compoundhet	homalt	77.4248	96.9072	64.4647	67.2143	282	9	283	156	151	96.7949
ckim-gatk	SNP	ti	map_l100_m2_e1	homalt	84.8134	73.6671	99.9340	67.2110	13624	4870	13624	9	7	77.7778
hfeng-pmm3	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	99.5604	99.1247	100.0000	67.2096	906	8	906	0	0
hfeng-pmm1	SNP	ti	map_l100_m0_e0	*	99.4038	99.1778	99.6308	67.2084	21592	179	21589	80	22	27.5000
asubramanian-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	*	97.1512	96.0630	98.2644	67.2067	732	30	736	13	8	61.5385
ltrigg-rtg2	INDEL	I1_5	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.4163	99.1347	99.6996	67.2044	2635	23	2655	8	4	50.0000
hfeng-pmm2	INDEL	I16_PLUS	HG002complexvar	*	98.3417	97.4026	99.2991	67.2031	1275	34	1275	9	8	88.8889
ckim-dragen	INDEL	D16_PLUS	HG002complexvar	*	97.0671	97.2002	96.9344	67.2029	1597	46	1581	50	37	74.0000
gduggal-snapvard	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	75.9688	61.9247	98.2517	67.2018	296	182	281	5	5	100.0000
ltrigg-rtg1	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	hetalt	96.2963	92.8571	100.0000	67.2000	78	6	82	0	0
ghariani-varprowl	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	44.8523	34.5009	64.0777	67.1975	197	374	198	111	78	70.2703
gduggal-snapfb	INDEL	I6_15	map_siren	het	82.4328	77.6224	87.8788	67.1968	111	32	145	20	18	90.0000
raldana-dualsentieon	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	het	88.8647	90.8347	86.9783	67.1961	555	56	521	78	77	98.7179
ckim-gatk	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	98.5230	99.2995	97.7586	67.1946	567	4	567	13	13	100.0000
ckim-vqsr	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	98.5230	99.2995	97.7586	67.1946	567	4	567	13	13	100.0000
jmaeng-gatk	SNP	*	lowcmp_AllRepeats_51to200bp_gt95identity_merged	*	99.2415	98.8665	99.6193	67.1895	4710	54	4710	18	5	27.7778
eyeh-varpipe	SNP	tv	map_l100_m2_e1	homalt	99.8487	99.8280	99.8695	67.1866	9286	16	9182	12	4	33.3333
hfeng-pmm3	INDEL	I16_PLUS	lowcmp_SimpleRepeat_quadTR_11to50	hetalt	97.6608	95.4286	100.0000	67.1845	167	8	169	0	0
gduggal-bwafb	SNP	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	98.1407	99.3309	96.9788	67.1842	35182	237	35277	1099	205	18.6533
bgallagher-sentieon	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	98.3553	99.7468	97.0021	67.1820	18120	46	18120	560	541	96.6071
bgallagher-sentieon	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	98.3553	99.7468	97.0021	67.1820	18120	46	18120	560	541	96.6071
gduggal-bwafb	SNP	tv	map_l100_m0_e0	homalt	99.3993	98.9600	99.8426	67.1804	3806	40	3806	6	4	66.6667
egarrison-hhga	SNP	ti	lowcmp_AllRepeats_51to200bp_gt95identity_merged	*	98.6867	98.3374	99.0385	67.1791	3194	54	3193	31	11	35.4839
gduggal-bwaplat	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_51to200	homalt	87.7517	81.7259	94.7368	67.1785	161	36	162	9	8	88.8889
ckim-gatk	SNP	tv	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	99.3819	99.8008	98.9665	67.1777	17533	35	17523	183	15	8.1967
ndellapenna-hhga	SNP	*	lowcmp_AllRepeats_51to200bp_gt95identity_merged	*	98.2384	97.7540	98.7277	67.1771	4657	107	4656	60	21	35.0000
dgrover-gatk	SNP	tv	map_l125_m2_e1	homalt	99.5624	99.2591	99.8675	67.1759	6029	45	6029	8	5	62.5000
gduggal-snapfb	SNP	tv	tech_badpromoters	homalt	95.1220	100.0000	90.6977	67.1756	39	0	39	4	1	25.0000
hfeng-pmm2	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	99.2845	98.6871	99.8893	67.1756	902	12	902	1	0	0.0000
jli-custom	INDEL	D16_PLUS	*	homalt	99.0858	99.2908	98.8817	67.1754	1680	12	1680	19	13	68.4211
dgrover-gatk	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	98.6111	99.4746	97.7625	67.1751	568	3	568	13	13	100.0000

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