PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
48101-48150 / 86044 show all | |||||||||||||||
| qzeng-custom | SNP | tv | map_siren | * | 92.0283 | 86.1093 | 98.8212 | 67.3017 | 39550 | 6380 | 39401 | 470 | 339 | 72.1277 | |
| asubramanian-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 99.4851 | 99.1786 | 99.7934 | 67.2973 | 483 | 4 | 483 | 1 | 1 | 100.0000 | |
| gduggal-snapfb | SNP | ti | map_l100_m1_e0 | homalt | 98.4338 | 97.1102 | 99.7940 | 67.2966 | 17441 | 519 | 17442 | 36 | 20 | 55.5556 | |
| hfeng-pmm3 | SNP | tv | map_l125_m1_e0 | homalt | 99.7525 | 99.7270 | 99.7780 | 67.2958 | 5844 | 16 | 5844 | 13 | 5 | 38.4615 | |
| jli-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 99.8378 | 99.7231 | 99.9528 | 67.2930 | 16928 | 47 | 16928 | 8 | 6 | 75.0000 | |
| jli-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 99.8378 | 99.7231 | 99.9528 | 67.2930 | 16928 | 47 | 16928 | 8 | 6 | 75.0000 | |
| jpowers-varprowl | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 63.2704 | 73.8711 | 55.3303 | 67.2928 | 1456 | 515 | 1474 | 1190 | 1180 | 99.1597 | |
| jpowers-varprowl | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 63.2704 | 73.8711 | 55.3303 | 67.2928 | 1456 | 515 | 1474 | 1190 | 1180 | 99.1597 | |
| ckim-gatk | SNP | ti | map_l100_m2_e0 | homalt | 84.7018 | 73.4994 | 99.9332 | 67.2925 | 13457 | 4852 | 13457 | 9 | 7 | 77.7778 | |
| gduggal-bwaplat | INDEL | D6_15 | HG002complexvar | het | 81.8591 | 70.8654 | 96.8901 | 67.2923 | 2211 | 909 | 2212 | 71 | 24 | 33.8028 | |
| astatham-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 98.2824 | 98.0398 | 98.5261 | 67.2886 | 64070 | 1281 | 63840 | 955 | 849 | 88.9005 | |
| astatham-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 98.2824 | 98.0398 | 98.5261 | 67.2886 | 64070 | 1281 | 63840 | 955 | 849 | 88.9005 | |
| hfeng-pmm2 | SNP | tv | map_l100_m1_e0 | * | 99.4801 | 99.5919 | 99.3687 | 67.2876 | 24401 | 100 | 24397 | 155 | 17 | 10.9677 | |
| anovak-vg | SNP | ti | map_l125_m2_e1 | homalt | 90.0123 | 82.2569 | 99.3822 | 67.2869 | 9425 | 2033 | 9330 | 58 | 53 | 91.3793 | |
| jlack-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 95.8084 | 98.6133 | 93.1587 | 67.2857 | 640 | 9 | 640 | 47 | 47 | 100.0000 | |
| jmaeng-gatk | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 93.2315 | 88.9794 | 97.9104 | 67.2852 | 1639 | 203 | 1640 | 35 | 28 | 80.0000 | |
| anovak-vg | INDEL | I1_5 | * | het | 38.2803 | 26.6836 | 67.7044 | 67.2836 | 21091 | 57950 | 25553 | 12189 | 4021 | 32.9888 | |
| ndellapenna-hhga | SNP | tv | map_l125_m1_e0 | * | 99.1238 | 98.5327 | 99.7220 | 67.2834 | 15781 | 235 | 15781 | 44 | 22 | 50.0000 | |
| gduggal-bwaplat | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 79.8194 | 68.1004 | 96.4103 | 67.2819 | 190 | 89 | 188 | 7 | 7 | 100.0000 | |
| jmaeng-gatk | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 93.8164 | 89.8325 | 98.1699 | 67.2797 | 751 | 85 | 751 | 14 | 12 | 85.7143 | |
| eyeh-varpipe | SNP | ti | map_l100_m1_e0 | * | 99.3616 | 99.7163 | 99.0095 | 67.2794 | 47795 | 136 | 46883 | 469 | 32 | 6.8230 | |
| ckim-vqsr | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 97.9511 | 97.2441 | 98.6684 | 67.2767 | 741 | 21 | 741 | 10 | 7 | 70.0000 | |
| qzeng-custom | INDEL | D16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 85.6106 | 97.3432 | 76.4021 | 67.2751 | 1319 | 36 | 2493 | 770 | 121 | 15.7143 | |
| ltrigg-rtg2 | SNP | tv | map_l150_m1_e0 | hetalt | 94.7368 | 90.0000 | 100.0000 | 67.2727 | 18 | 2 | 18 | 0 | 0 | ||
| ltrigg-rtg2 | SNP | * | map_l150_m1_e0 | hetalt | 94.7368 | 90.0000 | 100.0000 | 67.2727 | 18 | 2 | 18 | 0 | 0 | ||
| anovak-vg | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | het | 11.7647 | 6.8750 | 40.7407 | 67.2727 | 11 | 149 | 22 | 32 | 14 | 43.7500 | |
| gduggal-snapvard | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 88.6006 | 96.8987 | 81.6117 | 67.2685 | 1531 | 49 | 1509 | 340 | 6 | 1.7647 | |
| eyeh-varpipe | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 87.7794 | 88.9764 | 86.6142 | 67.2680 | 113 | 14 | 110 | 17 | 11 | 64.7059 | |
| gduggal-bwafb | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 45.3687 | 31.5895 | 80.4688 | 67.2634 | 157 | 340 | 103 | 25 | 24 | 96.0000 | |
| raldana-dualsentieon | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 98.1228 | 97.1074 | 99.1597 | 67.2627 | 235 | 7 | 236 | 2 | 2 | 100.0000 | |
| qzeng-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | het | 82.5611 | 76.9231 | 89.0909 | 67.2619 | 10 | 3 | 49 | 6 | 4 | 66.6667 | |
| ciseli-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 53.1073 | 38.5246 | 85.4545 | 67.2619 | 47 | 75 | 47 | 8 | 7 | 87.5000 | |
| rpoplin-dv42 | SNP | tv | map_l125_m1_e0 | homalt | 99.4262 | 99.0614 | 99.7937 | 67.2577 | 5805 | 55 | 5805 | 12 | 12 | 100.0000 | |
| rpoplin-dv42 | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | * | 55.8140 | 39.1304 | 97.2973 | 67.2566 | 36 | 56 | 36 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.5094 | 99.3762 | 99.6429 | 67.2531 | 6691 | 42 | 6696 | 24 | 19 | 79.1667 | |
| egarrison-hhga | INDEL | D16_PLUS | * | het | 92.0708 | 92.9408 | 91.2170 | 67.2524 | 2936 | 223 | 3043 | 293 | 261 | 89.0785 | |
| ltrigg-rtg2 | INDEL | I16_PLUS | HG002compoundhet | homalt | 10.1695 | 100.0000 | 5.3571 | 67.2515 | 3 | 0 | 3 | 53 | 52 | 98.1132 | |
| bgallagher-sentieon | SNP | * | map_l125_m0_e0 | homalt | 99.5370 | 99.2849 | 99.7904 | 67.2503 | 6664 | 48 | 6664 | 14 | 10 | 71.4286 | |
| eyeh-varpipe | INDEL | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 94.9804 | 93.5841 | 96.4190 | 67.2497 | 45174 | 3097 | 79672 | 2959 | 2749 | 92.9030 | |
| jli-custom | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 67.2489 | 525 | 0 | 525 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D16_PLUS | HG002complexvar | * | 96.5513 | 95.8004 | 97.3142 | 67.2463 | 1574 | 69 | 1558 | 43 | 31 | 72.0930 | |
| ckim-vqsr | SNP | tv | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 99.2929 | 99.5560 | 99.0312 | 67.2462 | 17490 | 78 | 17480 | 171 | 15 | 8.7719 | |
| gduggal-bwafb | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 83.1329 | 78.1250 | 88.8268 | 67.2461 | 225 | 63 | 318 | 40 | 25 | 62.5000 | |
| gduggal-bwavard | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | * | 44.1953 | 30.1465 | 82.7653 | 67.2461 | 1728 | 4004 | 1700 | 354 | 318 | 89.8305 | |
| jmaeng-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 97.8288 | 98.4539 | 97.2116 | 67.2453 | 14391 | 226 | 14015 | 402 | 380 | 94.5274 | |
| astatham-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 98.9634 | 98.0991 | 99.8431 | 67.2451 | 30551 | 592 | 30551 | 48 | 17 | 35.4167 | |
| astatham-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 98.9634 | 98.0991 | 99.8431 | 67.2451 | 30551 | 592 | 30551 | 48 | 17 | 35.4167 | |
| hfeng-pmm2 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 97.9592 | 96.0000 | 100.0000 | 67.2447 | 168 | 7 | 170 | 0 | 0 | ||
| ciseli-custom | SNP | ti | map_l125_m1_e0 | hetalt | 74.4186 | 66.6667 | 84.2105 | 67.2414 | 16 | 8 | 16 | 3 | 3 | 100.0000 | |
| jmaeng-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 97.4359 | 95.0000 | 100.0000 | 67.2414 | 19 | 1 | 19 | 0 | 0 | ||