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Explore HG002 comparison results

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Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 956 957 958 959 960 961 962 963 964 ... 1720 1721 » 47951-48000 / 86044 show all
ckim-vqsr	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	98.7459	99.6917	97.8179	67.5313	18110	56	18110	404	391	96.7822
ckim-vqsr	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	98.7459	99.6917	97.8179	67.5313	18110	56	18110	404	391	96.7822
rpoplin-dv42	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	*	96.8153	96.5079	97.1246	67.5311	608	22	608	18	14	77.7778
jlack-gatk	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	het	95.1497	98.3806	92.1243	67.5306	4374	72	4328	370	327	88.3784
gduggal-bwavard	INDEL	I16_PLUS	*	het	66.4433	91.0228	52.3161	67.5288	2474	244	2496	2275	1694	74.4615
hfeng-pmm1	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	homalt	94.7368	98.1043	91.5929	67.5287	207	4	207	19	18	94.7368
raldana-dualsentieon	SNP	ti	map_l100_m2_e0	het	99.0553	99.1379	98.9728	67.5282	30358	264	30351	315	6	1.9048
astatham-gatk	INDEL	I6_15	lowcmp_AllRepeats_51to200bp_gt95identity_merged	*	94.6848	91.6268	97.9540	67.5249	766	70	766	16	14	87.5000
cchapple-custom	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	96.6929	100.0000	93.5976	67.5248	311	0	307	21	20	95.2381
hfeng-pmm3	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	het	97.2445	96.0604	98.4581	67.5236	17117	702	16730	262	221	84.3511
ckim-gatk	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	98.7571	99.7248	97.8080	67.5218	18116	50	18116	406	393	96.7980
ckim-gatk	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	98.7571	99.7248	97.8080	67.5218	18116	50	18116	406	393	96.7980
astatham-gatk	SNP	*	map_l125_m0_e0	homalt	99.0469	98.3164	99.7883	67.5212	6599	113	6599	14	11	78.5714
ckim-vqsr	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	98.1314	98.8438	97.4291	67.5197	14448	169	14060	371	345	92.9919
cchapple-custom	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	99.2795	100.0000	98.5694	67.5186	1387	0	1378	20	1	5.0000
ghariani-varprowl	SNP	*	map_l125_m1_e0	homalt	99.0868	98.5271	99.6530	67.5166	16656	249	16656	58	39	67.2414
ckim-isaac	INDEL	I6_15	lowcmp_SimpleRepeat_diTR_11to50	homalt	79.4104	79.0850	79.7386	67.5159	121	32	122	31	27	87.0968
dgrover-gatk	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	100.0000	100.0000	100.0000	67.5124	525	0	525	0	0
hfeng-pmm2	SNP	ti	lowcmp_SimpleRepeat_diTR_11to50	*	98.1795	96.4441	99.9786	67.5115	4665	172	4665	1	0	0.0000
ndellapenna-hhga	INDEL	*	lowcmp_AllRepeats_51to200bp_gt95identity_merged	het	81.6855	91.2376	73.9439	67.5049	3686	354	4061	1431	1308	91.4046
ckim-gatk	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	94.9495	100.0000	90.3846	67.5000	188	0	188	20	19	95.0000
ckim-gatk	INDEL	I6_15	lowcmp_SimpleRepeat_triTR_51to200	*	100.0000	100.0000	100.0000	67.5000	13	0	13	0	0
asubramanian-gatk	INDEL	C1_5	lowcmp_SimpleRepeat_quadTR_51to200	homalt		0.0000	0.0000	67.5000	0	0	0	13	0	0.0000
ckim-vqsr	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	94.9495	100.0000	90.3846	67.5000	188	0	188	20	19	95.0000
ckim-vqsr	INDEL	I6_15	lowcmp_SimpleRepeat_triTR_51to200	*	100.0000	100.0000	100.0000	67.5000	13	0	13	0	0
jmaeng-gatk	INDEL	I16_PLUS	lowcmp_SimpleRepeat_triTR_11to50	hetalt	100.0000	100.0000	100.0000	67.5000	13	0	13	0	0
ltrigg-rtg1	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	homalt	98.1366	96.3415	100.0000	67.5000	79	3	78	0	0
ltrigg-rtg2	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	hetalt	100.0000	100.0000	100.0000	67.5000	12	0	13	0	0
ciseli-custom	SNP	ti	map_l125_m0_e0	homalt	86.4046	85.8606	86.9555	67.4980	3856	635	3853	578	472	81.6609
astatham-gatk	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	99.8092	99.6190	100.0000	67.4953	523	2	523	0	0
eyeh-varpipe	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	89.1158	94.4808	84.3273	67.4932	2020	118	2432	452	436	96.4602
gduggal-bwavard	SNP	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	97.0548	97.5889	96.5265	67.4923	34565	854	34181	1230	375	30.4878
ltrigg-rtg2	SNP	*	map_siren	hetalt	97.5000	96.2963	98.7342	67.4897	78	3	78	1	1	100.0000
ltrigg-rtg2	SNP	tv	map_siren	hetalt	97.5000	96.2963	98.7342	67.4897	78	3	78	1	1	100.0000
bgallagher-sentieon	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331	het	99.0727	99.1931	98.9527	67.4865	13646	111	13605	144	128	88.8889
bgallagher-sentieon	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het	99.0727	99.1931	98.9527	67.4865	13646	111	13605	144	128	88.8889
qzeng-custom	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	86.3374	97.6744	77.3585	67.4847	42	1	41	12	5	41.6667
hfeng-pmm2	SNP	tv	map_l125_m1_e0	homalt	99.7782	99.7952	99.7612	67.4839	5848	12	5848	14	5	35.7143
ghariani-varprowl	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	89.5152	98.0903	82.3188	67.4835	565	11	568	122	117	95.9016
rpoplin-dv42	INDEL	I1_5	lowcmp_AllRepeats_51to200bp_gt95identity_merged	*	91.2661	86.8078	96.2071	67.4824	1599	243	1598	63	54	85.7143
hfeng-pmm2	INDEL	D16_PLUS	*	homalt	99.0257	99.1135	98.9381	67.4789	1677	15	1677	18	12	66.6667
ckim-gatk	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	98.1904	98.9943	97.3994	67.4787	14470	147	14082	376	350	93.0851
eyeh-varpipe	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	het	83.5091	84.3949	82.6418	67.4764	1060	196	1195	251	203	80.8765
jlack-gatk	INDEL	D16_PLUS	lowcmp_SimpleRepeat_quadTR_51to200	*	96.2345	95.7792	96.6942	67.4731	590	26	585	20	16	80.0000
ndellapenna-hhga	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	96.7213	96.7213	96.7213	67.4667	118	4	118	4	3	75.0000
eyeh-varpipe	SNP	*	lowcmp_SimpleRepeat_diTR_11to50	het	95.7234	98.5247	93.0769	67.4612	6144	92	5324	396	73	18.4343
jli-custom	INDEL	I6_15	lowcmp_SimpleRepeat_quadTR_51to200	*	96.4034	93.5484	99.4382	67.4589	174	12	177	1	1	100.0000
jli-custom	INDEL	D16_PLUS	lowcmp_SimpleRepeat_quadTR_11to50	*	98.6345	97.9145	99.3651	67.4587	939	20	939	6	6	100.0000
astatham-gatk	INDEL	I16_PLUS	HG002complexvar	*	98.7711	98.2429	99.3050	67.4541	1286	23	1286	9	9	100.0000
jmaeng-gatk	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	98.5281	99.6497	97.4315	67.4470	569	2	569	15	15	100.0000

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