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Explore HG002 comparison results

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Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 954 955 956 957 958 959 960 961 962 ... 1720 1721 » 47851-47900 / 86044 show all
ndellapenna-hhga	SNP	ti	map_l125_m1_e0	*	99.1869	98.5512	99.8308	67.6959	28910	425	28910	49	27	55.1020
dgrover-gatk	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	98.1938	98.9533	97.4458	67.6938	14464	153	14078	369	346	93.7669
ndellapenna-hhga	SNP	ti	map_l125_m2_e1	homalt	99.7508	99.5636	99.9387	67.6903	11408	50	11408	7	7	100.0000
mlin-fermikit	SNP	tv	lowcmp_SimpleRepeat_diTR_11to50	homalt	96.2297	99.8868	92.8310	67.6868	1765	2	1774	137	123	89.7810
asubramanian-gatk	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*	96.4383	96.3424	96.5343	67.6863	41750	1585	44400	1594	1079	67.6913
ghariani-varprowl	INDEL	*	tech_badpromoters	*	78.6667	77.6316	79.7297	67.6856	59	17	59	15	15	100.0000
gduggal-bwafb	SNP	ti	map_l125_m1_e0	homalt	99.4956	99.1127	99.8814	67.6839	10947	98	10947	13	7	53.8462
eyeh-varpipe	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	*	79.2133	76.5550	82.0628	67.6812	160	49	183	40	33	82.5000
gduggal-snapplat	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	95.5771	92.0998	99.3274	67.6812	443	38	443	3	0	0.0000
astatham-gatk	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	98.8600	99.6324	98.0995	67.6806	1084	4	1084	21	19	90.4762
hfeng-pmm1	INDEL	D16_PLUS	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	97.9326	97.1076	98.7718	67.6791	3458	103	3458	43	30	69.7674
egarrison-hhga	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	93.9394	91.1765	96.8750	67.6768	62	6	62	2	1	50.0000
ckim-isaac	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	het	81.5179	74.0741	90.6250	67.6768	60	21	58	6	2	33.3333
gduggal-snapfb	SNP	*	map_l100_m1_e0	*	97.6767	97.7805	97.5731	67.6748	70796	1607	70802	1761	688	39.0687
jmaeng-gatk	SNP	tv	map_l100_m1_e0	homalt	82.1629	69.7335	99.9841	67.6746	6306	2737	6306	1	1	100.0000
gduggal-snapplat	INDEL	I1_5	HG002complexvar	het	73.7898	70.2842	77.6634	67.6709	12784	5405	12976	3732	123	3.2958
ltrigg-rtg1	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	84.9584	74.7191	98.4496	67.6692	133	45	127	2	2	100.0000
gduggal-bwaplat	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*	77.7807	65.3066	96.1451	67.6686	2545	1352	2544	102	31	30.3922
ltrigg-rtg2	INDEL	*	HG002compoundhet	het	95.9824	95.5300	96.4390	67.6682	3911	183	3954	146	79	54.1096
asubramanian-gatk	INDEL	C1_5	lowcmp_SimpleRepeat_diTR_11to50	homalt		0.0000	0.0000	67.6647	0	0	0	54	0	0.0000
raldana-dualsentieon	SNP	tv	map_l150_m1_e0	homalt	99.7335	99.5692	99.8983	67.6642	3929	17	3929	4	2	50.0000
jpowers-varprowl	INDEL	D16_PLUS	*	het	70.8402	90.6933	58.1179	67.6572	2865	294	2878	2074	2042	98.4571
ndellapenna-hhga	SNP	ti	map_l125_m2_e0	homalt	99.7486	99.5598	99.9381	67.6520	11308	50	11308	7	7	100.0000
hfeng-pmm3	INDEL	D16_PLUS	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	98.0292	97.0795	98.9977	67.6517	3457	104	3457	35	30	85.7143
ltrigg-rtg2	INDEL	D16_PLUS	lowcmp_SimpleRepeat_homopolymer_6to10	hetalt	100.0000	100.0000	100.0000	67.6471	12	0	11	0	0
asubramanian-gatk	INDEL	D6_15	HG002compoundhet	homalt	23.8806	100.0000	13.5593	67.6417	24	0	24	153	143	93.4641
dgrover-gatk	INDEL	I16_PLUS	HG002complexvar	*	98.9256	98.4721	99.3832	67.6397	1289	20	1289	8	8	100.0000
jli-custom	SNP	tv	map_l150_m1_e0	homalt	99.6698	99.4425	99.8982	67.6388	3924	22	3924	4	4	100.0000
ghariani-varprowl	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	*	95.7049	99.1018	92.5331	67.6378	1324	12	1326	107	8	7.4766
gduggal-bwaplat	SNP	ti	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	92.4984	86.7234	99.0973	67.6373	24247	3712	24262	221	75	33.9367
eyeh-varpipe	SNP	*	map_l100_m2_e1	hetalt	99.6805	100.0000	99.3631	67.6289	43	0	312	2	1	50.0000
ltrigg-rtg2	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	100.0000	100.0000	100.0000	67.6276	525	0	539	0	0
jmaeng-gatk	SNP	*	map_l100_m2_e0	homalt	84.0977	72.5829	99.9550	67.6272	19977	7546	19977	9	8	88.8889
jlack-gatk	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	homalt	87.7339	100.0000	78.1481	67.6259	211	0	211	59	58	98.3051
hfeng-pmm3	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	homalt	95.8716	99.0521	92.8889	67.6259	209	2	209	16	15	93.7500
astatham-gatk	INDEL	D16_PLUS	lowcmp_SimpleRepeat_triTR_11to50	homalt	100.0000	100.0000	100.0000	67.6259	45	0	45	0	0
hfeng-pmm2	SNP	*	map_l100_m2_e1	*	99.5245	99.5678	99.4812	67.6245	74414	323	74403	388	47	12.1134
qzeng-custom	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	96.4272	98.7275	94.2317	67.6240	1862	24	1944	119	18	15.1261
gduggal-snapfb	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	98.1579	99.2021	97.1354	67.6223	1119	9	1119	33	3	9.0909
hfeng-pmm2	SNP	*	map_l100_m2_e0	*	99.5209	99.5633	99.4785	67.6209	73641	323	73630	386	47	12.1762
mlin-fermikit	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	94.7617	96.8094	92.7988	67.6203	3641	120	3634	282	273	96.8085
mlin-fermikit	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	94.7617	96.8094	92.7988	67.6203	3641	120	3634	282	273	96.8085
ciseli-custom	INDEL	I1_5	lowcmp_SimpleRepeat_diTR_11to50	*	45.4191	32.4145	75.8496	67.6203	1858	3874	1674	533	342	64.1651
dgrover-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331	*	99.4591	99.4895	99.4288	67.6195	30984	159	30984	178	19	10.6742
dgrover-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	*	99.4591	99.4895	99.4288	67.6195	30984	159	30984	178	19	10.6742
rpoplin-dv42	INDEL	I1_5	lowcmp_SimpleRepeat_quadTR_11to50	homalt	98.8202	98.3099	99.3359	67.6190	1047	18	1047	7	5	71.4286
ckim-dragen	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	99.8974	100.0000	99.7951	67.6178	487	0	487	1	0	0.0000
ckim-dragen	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	99.8092	99.6190	100.0000	67.6161	523	2	523	0	0
raldana-dualsentieon	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	100.0000	100.0000	100.0000	67.6126	525	0	525	0	0
hfeng-pmm3	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.3763	98.7603	100.0000	67.6113	239	3	240	0	0

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