PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
47101-47150 / 86044 show all | |||||||||||||||
| gduggal-snapfb | INDEL | I6_15 | map_l125_m1_e0 | hetalt | 77.4194 | 75.0000 | 80.0000 | 68.7500 | 6 | 2 | 4 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 68.7500 | 5 | 0 | 5 | 0 | 0 | ||
| hfeng-pmm3 | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 68.7500 | 5 | 0 | 5 | 0 | 0 | ||
| hfeng-pmm1 | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 68.7500 | 5 | 0 | 5 | 0 | 0 | ||
| hfeng-pmm1 | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 68.7500 | 5 | 0 | 5 | 0 | 0 | ||
| astatham-gatk | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 68.7500 | 5 | 0 | 5 | 0 | 0 | ||
| astatham-gatk | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 68.7500 | 5 | 0 | 5 | 0 | 0 | ||
| bgallagher-sentieon | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 68.7500 | 5 | 0 | 5 | 0 | 0 | ||
| bgallagher-sentieon | SNP | * | map_l100_m0_e0 | hetalt | 96.7742 | 93.7500 | 100.0000 | 68.7500 | 15 | 1 | 15 | 0 | 0 | ||
| bgallagher-sentieon | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 68.7500 | 5 | 0 | 5 | 0 | 0 | ||
| bgallagher-sentieon | SNP | tv | map_l100_m0_e0 | hetalt | 96.7742 | 93.7500 | 100.0000 | 68.7500 | 15 | 1 | 15 | 0 | 0 | ||
| eyeh-varpipe | SNP | ti | lowcmp_SimpleRepeat_diTR_11to50 | het | 95.0505 | 97.9987 | 92.2745 | 68.7494 | 3085 | 63 | 2783 | 233 | 42 | 18.0258 | |
| anovak-vg | SNP | ti | map_l100_m1_e0 | * | 84.3963 | 88.5106 | 80.6475 | 68.7475 | 42424 | 5507 | 42052 | 10091 | 2274 | 22.5349 | |
| ltrigg-rtg2 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 86.4541 | 77.3273 | 98.0237 | 68.7461 | 515 | 151 | 496 | 10 | 2 | 20.0000 | |
| ltrigg-rtg2 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 86.4541 | 77.3273 | 98.0237 | 68.7461 | 515 | 151 | 496 | 10 | 2 | 20.0000 | |
| rpoplin-dv42 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 98.7849 | 98.6650 | 98.9051 | 68.7452 | 813 | 11 | 813 | 9 | 4 | 44.4444 | |
| hfeng-pmm2 | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 96.5157 | 97.8799 | 95.1890 | 68.7433 | 277 | 6 | 277 | 14 | 14 | 100.0000 | |
| gduggal-bwafb | SNP | ti | map_l100_m1_e0 | het | 98.8099 | 98.9880 | 98.6324 | 68.7421 | 29639 | 303 | 29641 | 411 | 94 | 22.8710 | |
| hfeng-pmm2 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 91.0253 | 90.5074 | 91.5493 | 68.7397 | 553 | 58 | 520 | 48 | 46 | 95.8333 | |
| bgallagher-sentieon | SNP | tv | map_l150_m1_e0 | homalt | 99.6318 | 99.4425 | 99.8219 | 68.7396 | 3924 | 22 | 3924 | 7 | 5 | 71.4286 | |
| ndellapenna-hhga | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 90.2022 | 93.2476 | 87.3494 | 68.7382 | 290 | 21 | 290 | 42 | 36 | 85.7143 | |
| gduggal-bwafb | INDEL | D6_15 | HG002compoundhet | homalt | 7.0180 | 95.8333 | 3.6424 | 68.7371 | 23 | 1 | 22 | 582 | 579 | 99.4845 | |
| bgallagher-sentieon | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | het | 99.6764 | 99.7409 | 99.6119 | 68.7361 | 3080 | 8 | 3080 | 12 | 9 | 75.0000 | |
| ckim-vqsr | INDEL | I1_5 | HG002complexvar | hetalt | 92.1493 | 85.6315 | 99.7409 | 68.7323 | 1478 | 248 | 1540 | 4 | 4 | 100.0000 | |
| hfeng-pmm1 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 96.0876 | 98.7138 | 93.5976 | 68.7321 | 307 | 4 | 307 | 21 | 20 | 95.2381 | |
| ciseli-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 92.4301 | 93.6681 | 91.2243 | 68.7320 | 1287 | 87 | 1289 | 124 | 91 | 73.3871 | |
| jli-custom | SNP | ti | map_l125_m2_e0 | * | 99.3639 | 99.1176 | 99.6114 | 68.7298 | 29991 | 267 | 29989 | 117 | 41 | 35.0427 | |
| asubramanian-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 96.9023 | 98.2941 | 95.5493 | 68.7291 | 3803 | 66 | 3757 | 175 | 166 | 94.8571 | |
| ltrigg-rtg2 | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 98.2976 | 98.3558 | 98.2394 | 68.7282 | 1675 | 28 | 1674 | 30 | 5 | 16.6667 | |
| raldana-dualsentieon | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 93.5412 | 99.5261 | 88.2353 | 68.7254 | 210 | 1 | 210 | 28 | 27 | 96.4286 | |
| jlack-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 90.6706 | 100.0000 | 82.9333 | 68.7239 | 311 | 0 | 311 | 64 | 63 | 98.4375 | |
| ckim-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 97.3847 | 99.1729 | 95.6599 | 68.7214 | 3837 | 32 | 3791 | 172 | 166 | 96.5116 | |
| cchapple-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 94.6263 | 91.4498 | 98.0315 | 68.7192 | 246 | 23 | 249 | 5 | 2 | 40.0000 | |
| dgrover-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 98.2738 | 99.4197 | 97.1540 | 68.7190 | 3255 | 19 | 3243 | 95 | 92 | 96.8421 | |
| ciseli-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 62.0432 | 53.7002 | 73.4554 | 68.7187 | 283 | 244 | 321 | 116 | 109 | 93.9655 | |
| ckim-gatk | INDEL | I1_5 | HG002complexvar | hetalt | 92.1829 | 85.6895 | 99.7411 | 68.7184 | 1479 | 247 | 1541 | 4 | 4 | 100.0000 | |
| gduggal-snapvard | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 58.8919 | 70.3704 | 50.6329 | 68.7129 | 57 | 24 | 80 | 78 | 56 | 71.7949 | |
| dgrover-gatk | INDEL | D16_PLUS | HG002complexvar | het | 98.2761 | 98.7353 | 97.8211 | 68.7119 | 1093 | 14 | 853 | 19 | 9 | 47.3684 | |
| gduggal-bwaplat | SNP | ti | map_siren | * | 90.8656 | 83.6301 | 99.4716 | 68.7099 | 83927 | 16428 | 83958 | 446 | 118 | 26.4574 | |
| egarrison-hhga | SNP | * | map_l125_m1_e0 | * | 99.4419 | 99.0690 | 99.8177 | 68.7095 | 44905 | 422 | 44905 | 82 | 41 | 50.0000 | |
| egarrison-hhga | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 80.5492 | 69.5652 | 95.6522 | 68.7075 | 48 | 21 | 44 | 2 | 2 | 100.0000 | |
| rpoplin-dv42 | SNP | tv | map_l100_m0_e0 | het | 98.5640 | 98.8507 | 98.2789 | 68.7061 | 7139 | 83 | 7138 | 125 | 50 | 40.0000 | |
| raldana-dualsentieon | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | het | 67.7708 | 83.7838 | 56.8966 | 68.7050 | 124 | 24 | 99 | 75 | 75 | 100.0000 | |
| ndellapenna-hhga | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 92.7374 | 90.2174 | 95.4023 | 68.7050 | 83 | 9 | 83 | 4 | 3 | 75.0000 | |
| ckim-vqsr | SNP | ti | map_siren | * | 86.3605 | 76.1935 | 99.6585 | 68.7036 | 76464 | 23891 | 76451 | 262 | 25 | 9.5420 | |
| egarrison-hhga | SNP | ti | map_l125_m2_e1 | homalt | 99.8253 | 99.7207 | 99.9300 | 68.7014 | 11426 | 32 | 11426 | 8 | 8 | 100.0000 | |
| astatham-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 93.2907 | 87.4251 | 100.0000 | 68.6975 | 146 | 21 | 149 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 83.0248 | 72.2847 | 97.5133 | 68.6969 | 6043 | 2317 | 6039 | 154 | 132 | 85.7143 | |
| gduggal-bwaplat | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 83.0248 | 72.2847 | 97.5133 | 68.6969 | 6043 | 2317 | 6039 | 154 | 132 | 85.7143 | |
| mlin-fermikit | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 83.4868 | 81.5589 | 85.5080 | 68.6930 | 3317 | 750 | 3316 | 562 | 522 | 92.8826 | |