PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
45451-45500 / 86044 show all | |||||||||||||||
| raldana-dualsentieon | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 99.7785 | 99.6681 | 99.8891 | 70.9180 | 5405 | 18 | 5405 | 6 | 5 | 83.3333 | |
| raldana-dualsentieon | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 99.7785 | 99.6681 | 99.8891 | 70.9180 | 5405 | 18 | 5405 | 6 | 5 | 83.3333 | |
| ndellapenna-hhga | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | het | 81.2926 | 90.9091 | 73.5160 | 70.9163 | 880 | 88 | 966 | 348 | 303 | 87.0690 | |
| jpowers-varprowl | INDEL | I1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 64.7210 | 53.4249 | 82.0746 | 70.9149 | 8322 | 7255 | 8292 | 1811 | 1705 | 94.1469 | |
| ckim-dragen | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 97.7620 | 95.9029 | 99.6947 | 70.9147 | 632 | 27 | 653 | 2 | 2 | 100.0000 | |
| ckim-dragen | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 97.7620 | 95.9029 | 99.6947 | 70.9147 | 632 | 27 | 653 | 2 | 2 | 100.0000 | |
| dgrover-gatk | SNP | ti | map_l100_m2_e0 | het | 99.4042 | 99.4416 | 99.3668 | 70.9135 | 30451 | 171 | 30444 | 194 | 39 | 20.1031 | |
| egarrison-hhga | SNP | * | map_l150_m1_e0 | homalt | 99.7690 | 99.6274 | 99.9110 | 70.9129 | 11231 | 42 | 11231 | 10 | 10 | 100.0000 | |
| ckim-dragen | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 98.7905 | 98.1855 | 99.4030 | 70.9117 | 974 | 18 | 999 | 6 | 2 | 33.3333 | |
| gduggal-bwaplat | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 95.0673 | 90.9611 | 99.5617 | 70.9107 | 1590 | 158 | 1590 | 7 | 6 | 85.7143 | |
| dgrover-gatk | SNP | ti | map_l100_m2_e1 | het | 99.4091 | 99.4477 | 99.3705 | 70.9092 | 30789 | 171 | 30782 | 195 | 39 | 20.0000 | |
| gduggal-bwafb | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 47.7273 | 35.0000 | 75.0000 | 70.9091 | 133 | 247 | 24 | 8 | 8 | 100.0000 | |
| rpoplin-dv42 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 91.1765 | 86.1111 | 96.8750 | 70.9091 | 31 | 5 | 31 | 1 | 1 | 100.0000 | |
| qzeng-custom | INDEL | D1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 97.1638 | 96.5250 | 97.8111 | 70.9066 | 62192 | 2239 | 63408 | 1419 | 1076 | 75.8280 | |
| ckim-isaac | SNP | * | map_l150_m2_e1 | homalt | 63.8200 | 46.8842 | 99.9099 | 70.9059 | 5545 | 6282 | 5545 | 5 | 5 | 100.0000 | |
| ckim-isaac | SNP | * | map_l150_m2_e0 | homalt | 63.7998 | 46.8587 | 99.9271 | 70.9027 | 5482 | 6217 | 5482 | 4 | 4 | 100.0000 | |
| mlin-fermikit | INDEL | I6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 86.4923 | 90.0065 | 83.2423 | 70.9011 | 1387 | 154 | 1371 | 276 | 273 | 98.9130 | |
| ltrigg-rtg2 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 94.9622 | 94.5860 | 95.3414 | 70.8976 | 1188 | 68 | 1187 | 58 | 6 | 10.3448 | |
| jmaeng-gatk | INDEL | D16_PLUS | * | * | 97.5405 | 97.4499 | 97.6314 | 70.8962 | 6611 | 173 | 6595 | 160 | 119 | 74.3750 | |
| mlin-fermikit | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 94.8647 | 92.1636 | 97.7290 | 70.8955 | 26462 | 2250 | 26465 | 615 | 21 | 3.4146 | |
| mlin-fermikit | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 94.8647 | 92.1636 | 97.7290 | 70.8955 | 26462 | 2250 | 26465 | 615 | 21 | 3.4146 | |
| ghariani-varprowl | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 83.2117 | 93.4426 | 75.0000 | 70.8955 | 114 | 8 | 117 | 39 | 37 | 94.8718 | |
| ciseli-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 74.3482 | 63.4615 | 89.7436 | 70.8955 | 33 | 19 | 35 | 4 | 4 | 100.0000 | |
| ghariani-varprowl | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 69.4308 | 85.9873 | 58.2206 | 70.8929 | 810 | 132 | 818 | 587 | 575 | 97.9557 | |
| ciseli-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 61.8907 | 65.6250 | 58.5586 | 70.8916 | 189 | 99 | 195 | 138 | 60 | 43.4783 | |
| hfeng-pmm2 | SNP | * | map_l125_m0_e0 | homalt | 99.6276 | 99.6573 | 99.5980 | 70.8911 | 6689 | 23 | 6689 | 27 | 10 | 37.0370 | |
| gduggal-bwavard | SNP | * | map_l125_m0_e0 | homalt | 98.3897 | 97.0501 | 99.7668 | 70.8893 | 6514 | 198 | 6417 | 15 | 11 | 73.3333 | |
| gduggal-bwaplat | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 81.2482 | 70.2896 | 96.2549 | 70.8872 | 30460 | 12875 | 30456 | 1185 | 636 | 53.6709 | |
| ciseli-custom | SNP | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 55.5556 | 76.9231 | 43.4783 | 70.8861 | 10 | 3 | 10 | 13 | 3 | 23.0769 | |
| ciseli-custom | SNP | tv | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 55.5556 | 76.9231 | 43.4783 | 70.8861 | 10 | 3 | 10 | 13 | 3 | 23.0769 | |
| ckim-dragen | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 70.8861 | 19 | 0 | 23 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 70.8861 | 19 | 0 | 23 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | D1_5 | * | hetalt | 77.7578 | 64.1093 | 98.7893 | 70.8854 | 6568 | 3677 | 6120 | 75 | 63 | 84.0000 | |
| raldana-dualsentieon | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 94.7226 | 94.2424 | 95.2077 | 70.8837 | 311 | 19 | 298 | 15 | 12 | 80.0000 | |
| ghariani-varprowl | SNP | ti | map_l100_m2_e1 | * | 98.6004 | 99.0118 | 98.1924 | 70.8832 | 48996 | 489 | 48998 | 902 | 186 | 20.6208 | |
| anovak-vg | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 72.7114 | 67.5333 | 78.7495 | 70.8829 | 2026 | 974 | 2179 | 588 | 262 | 44.5578 | |
| astatham-gatk | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 98.6775 | 97.7823 | 99.5893 | 70.8819 | 970 | 22 | 970 | 4 | 1 | 25.0000 | |
| ghariani-varprowl | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 98.4998 | 99.8728 | 97.1640 | 70.8797 | 785 | 1 | 788 | 23 | 13 | 56.5217 | |
| ckim-vqsr | INDEL | I16_PLUS | * | * | 97.2630 | 96.1267 | 98.4265 | 70.8795 | 6130 | 247 | 6130 | 98 | 83 | 84.6939 | |
| gduggal-bwafb | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 98.1652 | 97.0888 | 99.2658 | 70.8788 | 1334 | 40 | 1352 | 10 | 10 | 100.0000 | |
| rpoplin-dv42 | SNP | tv | map_l125_m2_e0 | * | 99.1468 | 99.0175 | 99.2763 | 70.8786 | 16327 | 162 | 16325 | 119 | 70 | 58.8235 | |
| ckim-dragen | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 92.7152 | 99.5261 | 86.7769 | 70.8785 | 210 | 1 | 210 | 32 | 32 | 100.0000 | |
| gduggal-snapplat | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 40.3615 | 29.2553 | 65.0602 | 70.8772 | 55 | 133 | 54 | 29 | 19 | 65.5172 | |
| bgallagher-sentieon | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 98.1835 | 98.9169 | 97.4610 | 70.8771 | 17626 | 193 | 17235 | 449 | 399 | 88.8641 | |
| hfeng-pmm3 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 99.1804 | 98.6259 | 99.7411 | 70.8758 | 45074 | 628 | 45075 | 117 | 14 | 11.9658 | |
| hfeng-pmm3 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 99.1804 | 98.6259 | 99.7411 | 70.8758 | 45074 | 628 | 45075 | 117 | 14 | 11.9658 | |
| ckim-isaac | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 78.7936 | 69.0909 | 91.6667 | 70.8738 | 38 | 17 | 55 | 5 | 4 | 80.0000 | |
| ckim-isaac | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 73.7864 | 82.6087 | 66.6667 | 70.8738 | 19 | 4 | 20 | 10 | 8 | 80.0000 | |
| asubramanian-gatk | INDEL | C1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 0.0000 | 0.0000 | 70.8738 | 0 | 0 | 0 | 30 | 0 | 0.0000 | ||
| ltrigg-rtg2 | INDEL | D1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 99.2575 | 98.7987 | 99.7206 | 70.8721 | 63657 | 774 | 63532 | 178 | 101 | 56.7416 | |